View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_7 (Length: 414)
Name: NF20012_low_7
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 33112524 - 33112142
Alignment:
| Q |
11 |
cacagataaccatataaatctacttttataaaatggtttaacaagattcacaaaattgggtgtggttcaatagacttctaagtttttacacaaatcatat |
110 |
Q |
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| T |
33112524 |
cacacataaccatataaatctacttttataaaatggtttaacaagattcacaaaattgggtgtggttcaatagacttctaagtttttacacaaatcatat |
33112425 |
T |
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| Q |
111 |
catattttcaaacatatgcatggtggacttggttatacttatacgtaacatggaggagattgtaaacgtcgtgctgtactctcataccattcatttataa |
210 |
Q |
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| T |
33112424 |
catattttcaaacatatgcatggtggacttggttatacttatacgtaacatggaggaggttgtaaacgtcgtgctgtactctcataccattcatttataa |
33112325 |
T |
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| Q |
211 |
agtataaccaaatatgaacaaatgtatgtagaaaatgtaaatattacactacttcgcatggccatgttgcactcggataaagaataagtcataacaaaat |
310 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33112324 |
agtataaccaaatatgaacaaa----tgtagaaaatgtaaatattacactacttcgcatggccatgttgcactcggataaagaataggtcataacaaaat |
33112229 |
T |
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| Q |
311 |
aatgcatctcattcaagcattaactcaatgatataaaagtcttcagttccattccaaaataattatgaggatttatctcaaacttgt |
397 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33112228 |
aatgcatctaattcaagcattaactcaatgatataaaagtcttcagttccattccaaaataattatgaggatttatcccaaacttgt |
33112142 |
T |
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