View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_8 (Length: 406)
Name: NF20012_low_8
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_8 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 384
Target Start/End: Complemental strand, 40607318 - 40606956
Alignment:
| Q |
22 |
tatttgttttaattgatatatcagtgccttgaaagcactttttaacattctcctaacaaaatttgagagaagaaaaatagtataatggctagtggctttg |
121 |
Q |
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| T |
40607318 |
tatttgttttagttgattgatcaatgccttgaaagcactttttaacattctcctaacaaaatttgagagaagaaaaatagtataatggctagtggctttg |
40607219 |
T |
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| Q |
122 |
catgtatgtcacgacgcatctatacacattgaaactcttttgtctttgtcgaatatactttgctttgttgaatttttagtactggtctcatttcttgatc |
221 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40607218 |
catgtatgtcacgacgcatctatagacattgaaactcttttgtcttggtcgaatatactttgctttgttgaatttttagtactggtctcctttcttgatc |
40607119 |
T |
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| Q |
222 |
tcttcatcatcattcaccaactcttctgtaaacatcaattgtactctctaccatctttttgacgaatttaaatttgtcacctaataaaatgtgttggact |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40607118 |
tcttcatcatcattcaccaactcttctgtaaacatcaattgtactctctaccatctttttgacgaatttaaatttgtcacctaataaaatgtgttggact |
40607019 |
T |
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| Q |
322 |
atcgtcgttattcattctaataaacttgtttttacttctttnnnnnnntagtaccagaacttc |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40607018 |
atcgtcgttattcattctaataaacttgtttttacttctttaaaaaaatagtaccagaacttc |
40606956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 25197174 - 25197144
Alignment:
| Q |
1 |
tataattagggacggagggagtatttgtttt |
31 |
Q |
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| T |
25197174 |
tataattagggacggagggagtatttgtttt |
25197144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 259137 - 259165
Alignment:
| Q |
1 |
tataattagggacggagggagtatttgtt |
29 |
Q |
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| T |
259137 |
tataattagggacggagggagtatttgtt |
259165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45907267 - 45907239
Alignment:
| Q |
1 |
tataattagggacggagggagtatttgtt |
29 |
Q |
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| T |
45907267 |
tataattagggacggagggagtatttgtt |
45907239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7784269 - 7784301
Alignment:
| Q |
1 |
tataattagggacggagggagtatttgttttaa |
33 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
7784269 |
tataattagggacggagggagtattttttttaa |
7784301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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