View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20013_high_13 (Length: 246)
Name: NF20013_high_13
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 19153530 - 19153303
Alignment:
| Q |
3 |
ttatttgtttaattgaatccgtttttaaatctttttgtaaggtgagagtaatgaaactnnnnnnnntcactagattcattaggttaagggagttagtaag |
102 |
Q |
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| T |
19153530 |
ttatttgtttaattgaatccgtttttaaatctttttgtaaggtgagaataatgaaactaaaaaaaatcactagattcattaggttaagggagttagtaag |
19153431 |
T |
|
| Q |
103 |
cttaataaatcctatcaacatttcaaaagtgaaaacctaagaaccatccaaaccatattagtttccttcggtttggttcaatttttaaattgaatnnnnn |
202 |
Q |
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| T |
19153430 |
cttaataaaccctatcaacatttcaaaagtgaaaa-ctaagaatcatccaaaccatattagtttccttcggtttggttcaatttttaaattgaataaaaa |
19153332 |
T |
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| Q |
203 |
nntatcgataatttttaattcggtttgat |
231 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
19153331 |
aagatcgataacttttaattcggtttgat |
19153303 |
T |
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