View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20013_high_16 (Length: 203)
Name: NF20013_high_16
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_high_16 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 7422383 - 7422181
Alignment:
| Q |
1 |
aaacaagtctgcaggtatgacctaggcgtcaacatcaaaggtttttatgtctccccacacattagaatcatttaactgcaattctcaggaatatcaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7422383 |
aaacaagtctgcaggtatgacctaggcttcaacatcaaaggtttttatgtctccccacacattagaatcatttaactgcaattctcaggaatatcaagaa |
7422284 |
T |
|
| Q |
101 |
ttgcacctatttagcaccgatatttcaaattgaaaggtgtgtctggtgtcgaacaccaccacgacaccaacacatataattacattcaatcacttctatt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7422283 |
ttgcacctatttagcaccgatacttcaaattgaaaggtgtgtctggtgtcgaacaccaccacgacaccaacacatataattacattcaatcacttctatt |
7422184 |
T |
|
| Q |
201 |
ttc |
203 |
Q |
| |
|
||| |
|
|
| T |
7422183 |
ttc |
7422181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 21470206 - 21470234
Alignment:
| Q |
162 |
cgacaccaacacatataattacattcaat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21470206 |
cgacaccaacacatataattacattcaat |
21470234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 28735820 - 28735853
Alignment:
| Q |
170 |
acacatataattacattcaatcacttctattttc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28735820 |
acacatataattacattcaatcacttctattttc |
28735853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 4005186 - 4005145
Alignment:
| Q |
161 |
acgacaccaacacatataattacattcaatcacttctatttt |
202 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
4005186 |
acgacactgacacatgtaattacattcaatcacttctatttt |
4005145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University