View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20013_high_6 (Length: 339)

Name: NF20013_high_6
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20013_high_6
NF20013_high_6
[»] chr3 (22 HSPs)
chr3 (16-308)||(30056603-30056876)
chr3 (155-324)||(30086771-30086940)
chr3 (136-324)||(30050130-30050318)
chr3 (89-250)||(30074720-30074881)
chr3 (136-325)||(30069391-30069580)
chr3 (184-324)||(30073000-30073140)
chr3 (176-317)||(30082014-30082155)
chr3 (211-324)||(30174013-30174126)
chr3 (112-318)||(30458571-30458760)
chr3 (242-325)||(25481278-25481361)
chr3 (245-325)||(30132644-30132724)
chr3 (245-325)||(30143591-30143671)
chr3 (13-63)||(30174504-30174554)
chr3 (172-261)||(30154777-30154867)
chr3 (141-193)||(30174150-30174202)
chr3 (43-90)||(30050319-30050366)
chr3 (43-90)||(30069581-30069628)
chr3 (152-197)||(29956076-29956121)
chr3 (152-197)||(30005231-30005276)
chr3 (152-208)||(29924258-29924314)
chr3 (152-208)||(29973411-29973467)
chr3 (25-73)||(30155018-30155066)
[»] chr6 (1 HSPs)
chr6 (219-273)||(35162436-35162490)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 30056876 - 30056603
Alignment:
Q  16 agttattatagtagtagtcgatccttgtacaaagtttgtgtttgtttaacctcagttagagataagcatgtagaagtttattcttttaagagggatacca 115  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||    
T  30056876 agttattatagtagtagtcgatccttgtacatagtgtgtgtttgtttaccctctgttatagataagcatatagaagtttattcttttaagagggatacca 30056777  T
Q  116 tacagaagccgttaacaattacctcagcttgtgtaatgtagtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataagacaattt 215  Q
    |||||||||| ||||||||||||||||||||||                  |||||||||||| ||||||||||| ||| ||||||||||| ||||||||    
T  30056776 tacagaagcctttaacaattacctcagcttgtg------------------tattaaattaacttcgtgtccctcacttttgaatttaataggacaattt 30056695  T
Q  216 gacgatccatggataaggctaaaacattaattttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataat 308  Q
     | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||  |||||||||||||| |||| |||||||    
T  30056694 caggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaagaaatgaactaatgcaatacaaagctgagctcataat 30056603  T

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Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 155 - 324
Target Start/End: Complemental strand, 30086940 - 30086771
Alignment:
Q  155 agtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataagacaatttgacgatccatggataaggctaaaacattaattttgtcta 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  30086940 agtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataagacaatttgaggatccatggataaggcaaaaacattaattttgtcta 30086841  T
Q  255 taaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataattaacaaacaatagtat 324  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  30086840 taaattgatgcatgcaagatatgaggaaatgcaatacaaagttgagctcataattaacaaacaatagtat 30086771  T

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Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 30050318 - 30050130
Alignment:
Q  136 acctcagcttgtgtaatgtagtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataagacaatttgacgatccatggataaggct 235  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||||||||     
T  30050318 acctcagcttgtgtattttagtgggaatgcttattaaattaacctcgtgtccctcgctgttgaatttaataaaacaatttgaagatccatggataaggca 30050219  T
Q  236 aaaacattaattttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataattaacaaacaatagtat 324  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30050218 aaaacattaattttgtctataaattgatgcatgcaagaaatgaagaaatgcaatacaaagttgagttcataattaacaaacaatagtat 30050130  T

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Target: chr3; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 30074881 - 30074720
Alignment:
Q  89 aagtttattcttttaagagggataccatacagaagccgttaacaattacctcagcttgtgtaatgtagtgggaatggttattaaattaacctcgtgtccc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  30074881 aagtttattcttttaagagggataccatacagaagccgttaacaattacctctgcttgtgtaatgcagtgggaatggttattaaattaacctcgtgtccc 30074782  T
Q  189 tcgcttctgaatttaataagacaatttgacgatccatggataaggctaaaacattaattttg 250  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30074781 tcgcttctgaatttaataagacaatttgaggatccatggataaggcaaaaacattaattttg 30074720  T

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Target: chr3; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 136 - 325
Target Start/End: Complemental strand, 30069580 - 30069391
Alignment:
Q  136 acctcagcttgtgtaatgtagtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataagacaatttgacgatccatggataaggct 235  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||      
T  30069580 acctcagcttgtgtattttagtgggaatgcttattaaattaacctcgtgtccctcgctgttgaatttaataagacaatttgaggatccatggataaggga 30069481  T
Q  236 aaaacattaattttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataattaacaaacaatagtatt 325  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||  ||||||||| ||||||||||||||    
T  30069480 aaaacattaattttgtctataaattgatgcatgcaagaaataaaaaaatgcaataaaaagttgatctcataattagcaaacaatagtatt 30069391  T

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Target: chr3; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 30073140 - 30073000
Alignment:
Q  184 gtccctcgcttctgaatttaataagacaatttgacgatccatggataaggctaaaacattaattttgtctataaattgatgcatgcaagatatgaaaaaa 283  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  30073140 gtccctcgcttctgaatttaataagacaatttgaggatccatggataaggcaaaaacattaattttgtctataaattgatgcatgcaagatatgaagaaa 30073041  T
Q  284 tgcaatacaaagttgagttcataattaacaaacaatagtat 324  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30073040 tgcaatacaaagttgagttcataattaacaaacaatagtat 30073000  T

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Target: chr3; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 30082155 - 30082014
Alignment:
Q  176 aacctcgtgtccctcgcttctgaatttaataagacaatttgacgatccatggataaggctaaaacattaattttgtctataaattgatgcatgcaagata 275  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |    
T  30082155 aacctcgtgtccctcgcttctgaatataataagacaatttgaggatccactgataaggcaaaaacattaattttgtctataaattgatgcatgcaagaaa 30082056  T
Q  276 tgaaaaaatgcaatacaaagttgagttcataattaacaaaca 317  Q
    |||| |||| ||||||||||||||| ||||||||||||||||    
T  30082055 tgaacaaatacaatacaaagttgagctcataattaacaaaca 30082014  T

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Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 324
Target Start/End: Complemental strand, 30174126 - 30174013
Alignment:
Q  211 aatttgacgatccatggataaggctaaaacattaattttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataatta 310  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||| |||||    
T  30174126 aatttgaggatccatggataaggcaaaaacattaactttgtctataaattgattcatgcaagaaatgaagaaatgcaatacaaagttgagctcagaatta 30174027  T
Q  311 acaaacaatagtat 324  Q
    ||||||||||||||    
T  30174026 acaaacaatagtat 30174013  T

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Target: chr3; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 318
Target Start/End: Original strand, 30458571 - 30458760
Alignment:
Q  112 accatacagaagccgttaacaattacctcagcttgtgtaatgtagtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataagaca 211  Q
    |||||| ||||| |||||||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30458571 accatatagaagtcgttaacaatcacatcagcttgtgtaacgtggtgggaatggttattaaattaacctcgtgtccctcgcttttgaatttaataagaca 30458670  T
Q  212 atttgacgatccatggataaggctaaaacattaattttgtctataaattg-atgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataatta 310  Q
    |||| | ||||||                  | | ||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||     
T  30458671 atttcaggatcca------------------ttactttgtttataaattgcatgcatgcaagaaatgaagaaatgcaatacaaagttgagttcataattt 30458752  T

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Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 25481278 - 25481361
Alignment:
Q  242 ttaattttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataattaacaaacaatagtatt 325  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||||||||| |||| ||||||||||||||||||||||||    
T  25481278 ttaattttgtctataaattggtgcatgcaagaaatgaaccaatgcaatacaaagctgagctcataattaacaaacaatagtatt 25481361  T

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Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 30132724 - 30132644
Alignment:
Q  245 attttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataattaacaaacaatagtatt 325  Q
    ||||||||||||||||| || |||||||| |||||  | ||||||||||||||||| ||||||||||||||||||||||||    
T  30132724 attttgtctataaattgttgaatgcaagaaatgaactagtgcaatacaaagttgagctcataattaacaaacaatagtatt 30132644  T

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Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 30143671 - 30143591
Alignment:
Q  245 attttgtctataaattgatgcatgcaagatatgaaaaaatgcaatacaaagttgagttcataattaacaaacaatagtatt 325  Q
    ||||||||||||||||| || |||||||| |||||  | ||||||||||||||||| ||||||||||||||||||||||||    
T  30143671 attttgtctataaattgttgaatgcaagaaatgaactagtgcaatacaaagttgagctcataattaacaaacaatagtatt 30143591  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 30174554 - 30174504
Alignment:
Q  13 cagagttattatagtagtagtcgatccttgtacaaagtttgtgtttgttta 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30174554 cagagttattatagtagtagtcggtccttgtacaaagtttgtgtttgttta 30174504  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 30154867 - 30154777
Alignment:
Q  172 aattaacctcgtgtccctcgcttctgaatttaataagaca--atttgacgatccatggataaggctaaaacattaattttgtctataaattg 261  Q
    |||||||||||||| |||| ||||||||||||||||| ||  |||| | ||| ||||||| || | |||||||| ||||| |||||||||||    
T  30154867 aattaacctcgtgttcctcacttctgaatttaataaggcaatatttcaggatacatggatcagacaaaaacatt-attttatctataaattg 30154777  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 30174202 - 30174150
Alignment:
Q  141 agcttgtgtaatgtagtgggaatggttattaaattaacctcgtgtccctcgct 193  Q
    |||||||| | | |||||| ||| |||||||||||||||||||||||||||||    
T  30174202 agcttgtgaattttagtggaaatagttattaaattaacctcgtgtccctcgct 30174150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 30050366 - 30050319
Alignment:
Q  43 tacaaagtttgtgtttgtttaacctcagttagagataagcatgtagaa 90  Q
    |||| |||||||||||||||| ||||||||| |||||||||| |||||    
T  30050366 tacagagtttgtgtttgtttaccctcagttatagataagcatatagaa 30050319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 30069628 - 30069581
Alignment:
Q  43 tacaaagtttgtgtttgtttaacctcagttagagataagcatgtagaa 90  Q
    |||| |||||||||||||||| ||||||||| |||||||||| |||||    
T  30069628 tacagagtttgtgtttgtttaccctcagttatagataagcatatagaa 30069581  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 29956121 - 29956076
Alignment:
Q  152 tgtagtgggaatggttattaaattaacctcgtgtccctcgcttctg 197  Q
    |||||||||| || |||||||||||||||||||| ||| |||||||    
T  29956121 tgtagtgggattgattattaaattaacctcgtgtgccttgcttctg 29956076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 30005276 - 30005231
Alignment:
Q  152 tgtagtgggaatggttattaaattaacctcgtgtccctcgcttctg 197  Q
    |||||||||| || |||||||||||||||||||| ||| |||||||    
T  30005276 tgtagtgggattgattattaaattaacctcgtgtgccttgcttctg 30005231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 29924314 - 29924258
Alignment:
Q  152 tgtagtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataag 208  Q
    |||| |||||||  ||||| |||||||||| ||| ||||||||||||||||| ||||    
T  29924314 tgtactgggaattcttatttaattaacctcatgtgcctcgcttctgaatttagtaag 29924258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 29973467 - 29973411
Alignment:
Q  152 tgtagtgggaatggttattaaattaacctcgtgtccctcgcttctgaatttaataag 208  Q
    |||| |||||||  ||||| |||||||||| ||| ||||||||||||||||| ||||    
T  29973467 tgtactgggaattcttatttaattaacctcatgtgcctcgcttctgaatttagtaag 29973411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 30155066 - 30155018
Alignment:
Q  25 agtagtagtcgatccttgtacaaagtttgtgtttgtttaacctcagtta 73  Q
    ||||| |||| ||||||||||| |||||||||||| ||||||| |||||    
T  30155066 agtagcagtctatccttgtacagagtttgtgtttgattaaccttagtta 30155018  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 35162436 - 35162490
Alignment:
Q  219 gatccatggataaggctaaaacattaattttgtctataaattgatgcatgcaaga 273  Q
    |||| |||||| | || ||| |||| |||||||||||||||||||||||||||||    
T  35162436 gatcgatggatcatgcaaaagcatttattttgtctataaattgatgcatgcaaga 35162490  T

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