View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20013_low_10 (Length: 290)
Name: NF20013_low_10
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 7422622 - 7422354
Alignment:
| Q |
17 |
aattagttggtgttggattttagaaaaatggatcactttaaatacctcactgcacagtccttttaaaacgatggatcatagcatatgcaaaagaagctct |
116 |
Q |
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| T |
7422622 |
aattagttggtgttggattttagaaaaatggatcactttaaatacctcactgcacagtccttttaaaacgatggatcatagcatatgcaaaagaagctct |
7422523 |
T |
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| Q |
117 |
ctagaacagaatttatgaatggtgtagttcaagtgtttcaaataacggtcaacaaatgtgactacggctgtatcaaccctatgtgta-nnnnnnnnctgc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7422522 |
ctagaacagaatttatgaatggtgtagttcaagtgtttcaaataacggtcaacaaatgtgactacggctgtatcaaccctatgtgtatttttttttctgc |
7422423 |
T |
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| Q |
216 |
aataccaaagatcacaatataaccacaactaatgtttcgaaacaagtctgcaggtatgacctatgcttc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7422422 |
aataccaaagatcacaatataaccacaactaatgtttcgaaacaagtctgcaggtatgacctaggcttc |
7422354 |
T |
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