View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20013_low_2 (Length: 728)
Name: NF20013_low_2
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 44 - 613
Target Start/End: Complemental strand, 39923156 - 39922591
Alignment:
| Q |
44 |
atatatattgatcattgttaaaagcggttaaatcttcgtggcaataacataatgagaagaaaaaagattagtgtagatgtaaattgctatcaacaaatat |
143 |
Q |
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| T |
39923156 |
atatatattgatcattgttaaaagcggttaaatcttcgtggcaataacatgatgagaagaaaaaagattagtgtagatgtaaattgctatcaacaaaaat |
39923057 |
T |
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| Q |
144 |
gttgatgtaatattgcatataattacgcaaggttttctaccttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagac |
243 |
Q |
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| T |
39923056 |
gttgatgtaatattgcatataattacgcaaggttttctaccttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagac |
39922957 |
T |
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| Q |
244 |
gcacatgtactagaagttgagatttttaactttacaaattcacagcaaaatggcattctaaacatgaacatacgtataagtccgcaaaactaaatcaaac |
343 |
Q |
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| T |
39922956 |
gcacatgtactagaagttgagatttttaactttacaaattcacagcaaaatggcattctaa------acatacgtataactccgcaaaactaaatcaaac |
39922863 |
T |
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| Q |
344 |
ccatactatatcacatcaccaagaaaggattatgtatctatggactttttgttttaagga--tatctatgaacttataatcaacatactctagcaaaaat |
441 |
Q |
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| T |
39922862 |
ccatactatatcacatcaccaagaaagcattatgtatctatggactttttgttttaaggatgtatctatgaacttataatcaacatactctagcataaat |
39922763 |
T |
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| Q |
442 |
ggtattaacttggacccttgatcatttaatttaatgtttgatcattgaccaatgtgtatgnnnnnnnnnnnnnnnnnnnnnnncgaaccgttaaatggaa |
541 |
Q |
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| T |
39922762 |
ggtattaacttggacccttgatcatttaatttaatgtttgatcattgaccaatgtgtatgaaaaaatatatatcaaaaaatatcgaaccgttaaatggaa |
39922663 |
T |
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| Q |
542 |
tatcaattttctggagagattagtttctgctcatgcgtgtataacagacagtataagataccttaatttact |
613 |
Q |
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| T |
39922662 |
tatcaattttctggagagattagtttctgctcatgcgtgtataacagacagtataagataccttaatttact |
39922591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 667 - 712
Target Start/End: Complemental strand, 39922591 - 39922546
Alignment:
| Q |
667 |
ttgtgaattgatttttatcatttatatttgcatagttcacaattgt |
712 |
Q |
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| T |
39922591 |
ttgtgaattgatttttatcatttatatttgcatagtacacaattgt |
39922546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 39923194 - 39923161
Alignment:
| Q |
18 |
attgtatgcttgacaagttcctcaacatatatat |
51 |
Q |
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| T |
39923194 |
attgtatgcttgacaagttcctcaacatatatat |
39923161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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