View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20013_low_3 (Length: 670)
Name: NF20013_low_3
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_low_3 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 15 - 670
Target Start/End: Complemental strand, 12956839 - 12956184
Alignment:
| Q |
15 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
114 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12956839 |
tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
12956740 |
T |
|
| Q |
115 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
12956739 |
caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagca |
12956640 |
T |
|
| Q |
215 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12956639 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaatcgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
12956540 |
T |
|
| Q |
315 |
catgaaggttattttgtgttattgtgaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaa |
414 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
12956539 |
catgaaggttattttgtgttaccgcaagggcaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcacccaaagctaa |
12956440 |
T |
|
| Q |
415 |
aattgtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatg |
514 |
Q |
| |
|
|| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
12956439 |
aaatgtcaagtgtttgcagcaacatatttcttgtggaatatctccctcaaaattgttacgagaagctgatagacgtgttaagcttgaaagatttcctatg |
12956340 |
T |
|
| Q |
515 |
aatgaagggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggt |
614 |
Q |
| |
|
|||||||||||||| || ||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12956339 |
aatgaagggattccaccagttaacttgtttctccaaacagtcattctttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggt |
12956240 |
T |
|
| Q |
615 |
tcccacgcaaaatcaataatttgagattcgagcaatatgtcaggtttgtaggaatc |
670 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
12956239 |
tcccattcaaaaacaataatttgagattggagcaatatgtcaagtttgttggaatc |
12956184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 670
Target Start/End: Complemental strand, 12931037 - 12930382
Alignment:
| Q |
15 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
114 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||| || |
|
|
| T |
12931037 |
tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc |
12930938 |
T |
|
| Q |
115 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
214 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12930937 |
caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagca |
12930838 |
T |
|
| Q |
215 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930837 |
tttgcaatcgaagtagggattggacctgagaattgatttgctgcaaaagcgaatatttgaatattggggagggtgtggaacatgttgggtggaaaagagc |
12930738 |
T |
|
| Q |
315 |
catgaaggttattttgtgttattgtgaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaa |
414 |
Q |
| |
|
||||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
12930737 |
catgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcactcacacctaa |
12930638 |
T |
|
| Q |
415 |
aattgtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | || |||||||| | | |||| |||||||| ||||||||||||||| |
|
|
| T |
12930637 |
aattgtcaagtgtttgaggaaacatatttcttgtggaatcttaccggagaaattgttctcacccaaatttagacgtgttaagcatgaaagatttcctata |
12930538 |
T |
|
| Q |
515 |
aatgaagggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggt |
614 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
12930537 |
aatgaagggattccttcggttaaatggttattcccaacagatattgcttgaagctttttcaaagagccaatttcaattggtattttaccattgagatggt |
12930438 |
T |
|
| Q |
615 |
tcccacgcaaaatcaataatttgagattcgagcaatatgtcaggtttgtaggaatc |
670 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12930437 |
tcccattcaaatacaataatttgagattggagcaatatgtcaggtttgtaggaatc |
12930382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 22 - 670
Target Start/End: Complemental strand, 12947395 - 12946747
Alignment:
| Q |
22 |
agatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaattt |
121 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
12947395 |
agatatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaactt |
12947296 |
T |
|
| Q |
122 |
agattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaa |
221 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12947295 |
aggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaa |
12947196 |
T |
|
| Q |
222 |
tcgaaatagggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaag |
321 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12947195 |
ttgaaataggaattggacctgagaattgatttgctccaaaatagaatagttcaagattggggagggtgtggaacatgttgggtgcaaaagagccatgaag |
12947096 |
T |
|
| Q |
322 |
gttattttgtgttattgtgaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaaaattgtc |
421 |
Q |
| |
|
|| ||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |||| |
|
|
| T |
12947095 |
gtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcattcaaagctaaaaatgtc |
12946996 |
T |
|
| Q |
422 |
aagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatgaag |
521 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
12946995 |
aagtgtttgagaaaacatatttcttgtggaatgtctccctcaaaattgttttcagaaactaatagacgtgttaagcttgaaagatttccaatgaatgaag |
12946896 |
T |
|
| Q |
522 |
ggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccacg |
621 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12946895 |
ggattcctccgattaaattgtttttcgcaacagtcattgcttgaaccttcttcaaagagccgatttcagttggtattttaccgatgagatggttcccact |
12946796 |
T |
|
| Q |
622 |
caaaatcaataatttgagattcgagcaatatgtcaggtttgtaggaatc |
670 |
Q |
| |
|
||||| ||| |||||||| || || |||||||||||||||||||||||| |
|
|
| T |
12946795 |
caaaaacaaaaatttgagtttggaacaatatgtcaggtttgtaggaatc |
12946747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 40 - 670
Target Start/End: Complemental strand, 12905923 - 12905292
Alignment:
| Q |
40 |
tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| || |||| ||||| ||||||||| |||| |
|
|
| T |
12905923 |
tagtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgt |
12905824 |
T |
|
| Q |
140 |
aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12905823 |
aaattccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggac |
12905724 |
T |
|
| Q |
240 |
ctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattttgtgttattgt |
339 |
Q |
| |
|
| ||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | | | |
|
|
| T |
12905723 |
cagagaattgatttgatgcaaaatgtaataatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttcttccaccgc |
12905624 |
T |
|
| Q |
340 |
gaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgtt-cagacccacacctaaaattgtcaagtgtttgaggaaaca |
438 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
12905623 |
aagggtaataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaaca |
12905524 |
T |
|
| Q |
439 |
tatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatgaagggattcctccggttaaa |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
12905523 |
tatttcttgtggaatatctccctcaaaattgttaccagaaactgatagacgtgttaagcttgaaatatttcctatgaatgaagggattccaccggttaac |
12905424 |
T |
|
| Q |
539 |
ttgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccacgcaaaatcaataatttga |
638 |
Q |
| |
|
||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||| |
|
|
| T |
12905423 |
ttgtttctccaaacactcattgtttgaagctttttcaaagagccgatttcagttggtattttaccaatgagatggttcccattcaaatacaataacttga |
12905324 |
T |
|
| Q |
639 |
gattcgagcaatatgtcaggtttgtaggaatc |
670 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
12905323 |
gattggagcaatatgtcaggtttgtaggaatc |
12905292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 40 - 670
Target Start/End: Complemental strand, 12898302 - 12897671
Alignment:
| Q |
40 |
tagtttactgcaattagtcaaatattttagaaattctaaa-tccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttg |
138 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || |||| ||||| ||||||||| ||| |
|
|
| T |
12898302 |
tagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttg |
12898203 |
T |
|
| Q |
139 |
taaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattgga |
238 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
12898202 |
taaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagcaatcgaaataggaattgga |
12898103 |
T |
|
| Q |
239 |
cctgagaattgatttgctgcaaac-gtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattttgtgttatt |
337 |
Q |
| |
|
|| |||||||||||| || |||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
12898102 |
ccagagaattgatttcctccaaaatgtaaaaattt-aagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgcc |
12898004 |
T |
|
| Q |
338 |
gtgaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaaaattgtcaagtgtttgaggaaac |
437 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||| |||||||||||||||||||| |
|
|
| T |
12898003 |
gaaagtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaac |
12897904 |
T |
|
| Q |
438 |
atatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatgaagggattcctccggttaa |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12897903 |
atatttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaa |
12897804 |
T |
|
| Q |
538 |
attgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccacgcaaaatcaataatttg |
637 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| |||||| ||| |
|
|
| T |
12897803 |
attgttattccgaacaaacattgattgaagctttttcaaagagccgaattcagttggtattttaccaatgagatggttcccattcaaatacaataacttg |
12897704 |
T |
|
| Q |
638 |
agattcgagcaatatgtcaggtttgtaggaatc |
670 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
12897703 |
agattggagcaatatgtcaggtttgtaggaatc |
12897671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 670
Target Start/End: Original strand, 17924854 - 17925509
Alignment:
| Q |
15 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
114 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| | | ||||||||||||| || |
|
|
| T |
17924854 |
tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
17924953 |
T |
|
| Q |
115 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
214 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||| |
|
|
| T |
17924954 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
17925053 |
T |
|
| Q |
215 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17925054 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
17925153 |
T |
|
| Q |
315 |
catgaaggttattttgtgttattgtgaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaa |
414 |
Q |
| |
|
| ||| |||||||||| | | ||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||| | |||| |
|
|
| T |
17925154 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaa |
17925253 |
T |
|
| Q |
415 |
aattgtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatg |
514 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||| |||||||||||||||| |
|
|
| T |
17925254 |
aaatgtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgttaagcatgaaagatttcctatg |
17925353 |
T |
|
| Q |
515 |
aatgaagggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggt |
614 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17925354 |
aatgaagggattcctccagttaaattgttatgcgcaacagtcatggcttgaagttttttcaaagagccgatttcagttggtattttaccaatgagatggt |
17925453 |
T |
|
| Q |
615 |
tcccacgcaaaatcaataatttgagattcgagcaatatgtcaggtttgtaggaatc |
670 |
Q |
| |
|
|||||| ||||| ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
17925454 |
tcccactcaaaaacaataatttgagattagaacaatatgtcaggtttgtaggaatc |
17925509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 15 - 669
Target Start/End: Complemental strand, 10610468 - 10609817
Alignment:
| Q |
15 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
114 |
Q |
| |
|
|||||| |||||| ||||| | | ||||||||| || || ||||||||||||| ||| |||||||| ||||||||| ||||||| |||| ||| ||| |
|
|
| T |
10610468 |
tattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattc |
10610369 |
T |
|
| Q |
115 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
214 |
Q |
| |
|
|||| | || | |||||||| |||| ||| |||||||||||||||||||||||||||| ||| | ||||| || | || |||||||| ||||||| |
|
|
| T |
10610368 |
caaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaaatt---gttttgacctaaatcaattatttgtagggaagaagca |
10610272 |
T |
|
| Q |
215 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacgtg---aatatttgaagattggggagggtgtggaacatgttgggtggaaaag |
311 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| || || || || |||||| |||| |||||||||| |||||||||||||||| | |
|
|
| T |
10610271 |
tttgcaatggaaacagggattggacctgagaattgatttcctccag--gttcaaaagatttga-gattagggagggtgtaaaacatgttgggtggaagtg |
10610175 |
T |
|
| Q |
312 |
agccatgaaggttattttgtgttattgtgaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacc |
411 |
Q |
| |
|
|||||| || |||| |||| || ||| || |||||| ||||||||| |||||||||||||||||| |||| ||||||| ||| | ||||| | |
|
|
| T |
10610174 |
agccattaaatctattcatggttagtgagagttcagtaagtgctgagatattgtaaagacaagaaggaatcataccagacaaatagtttacacccataaa |
10610075 |
T |
|
| Q |
412 |
taaaattgtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcct |
511 |
Q |
| |
|
|||| | |||| | |||||| |||| |||||||||||||||| || || || ||||| || |||||| | | ||||||| ||||||||| ||| |
|
|
| T |
10610074 |
taaacctctcaaatttttgagacgacatgtttcttgtggaatatccccttctaagttgtttgaagtaactgaaaaacgcgttaagcatgaaagattccct |
10609975 |
T |
|
| Q |
512 |
atgaatgaagggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagat |
611 |
Q |
| |
|
| ||||||||| |||||||||||||| ||||| |||| || |||| | ||||||||||||||||||||| |||||| | |||||||| ||| | | || |
|
|
| T |
10609974 |
acgaatgaaggaattcctccggttaatttgtttttccaaatggtcacatattgaagctttttcaaagagccaatttcaatcggtattttgccaatcaaat |
10609875 |
T |
|
| Q |
612 |
ggttcccacgcaaaatcaataatttgagattcgagcaatatgtcaggtttgtaggaat |
669 |
Q |
| |
|
||| || | |||| || ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
10609874 |
tgtttcctcccaaacgtaactctttgagattggagcaatgtgtcaggtttgtaggaat |
10609817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 40 - 669
Target Start/End: Original strand, 10748491 - 10749117
Alignment:
| Q |
40 |
tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt |
139 |
Q |
| |
|
||||||||| ||||| |||||||| |||| ||| |||||||| ||||||||| ||||||| |||| ||| || ||||||||| | ||||||||||| |
|
|
| T |
10748491 |
tagtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgt |
10748590 |
T |
|
| Q |
140 |
aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac |
239 |
Q |
| |
|
|| ||| |||||||||||||||| || ||||||| ||| | ||||||| | || |||||||| |||||||||| |||| |||||||| |||| || |
|
|
| T |
10748591 |
aacttctctagacttggaacttgccccaccaaat---agttttgagctaagtcaagtaattgtagggaagaagcatttacaatggaaataggcattgaac |
10748687 |
T |
|
| Q |
240 |
ctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattttgtgttattgt |
339 |
Q |
| |
|
| |||| |||||| | ||| ||| || | ||||||||||| |||| ||||| ||||| ||||| ||||||| || ||||||| |||| || |
|
|
| T |
10748688 |
caaagaactgattttttccaatttggaacatgttgagattggggagagtgttgaacaagttggatggaagagagccaataaatttattttcggttagtga |
10748787 |
T |
|
| Q |
340 |
gaggccaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaaaattgtcaagtgtttgaggaaacat |
439 |
Q |
| |
|
||| | | ||||||||||||||||||||||||||||||| | |||| |||||||||||| ||||||| ||| || | | || |||||| |||| |
|
|
| T |
10748788 |
gagttgagttagtgatgagatattataaagacaagaaggaaacataccagacaaattgttctcacccacatgtaaccttctaatgtttttgagattacat |
10748887 |
T |
|
| Q |
440 |
atttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatgaagggattcctccggttaaat |
539 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| | ||| | | | ||||| ||||||||| |||||||||||||| | ||| || ||||||| |
|
|
| T |
10748888 |
atttcttgtggaatctctccctttaagttgttatatgtaaccgcaatccctattaaggatgaaagattccctatgaatgaaggaaatccaccagttaaat |
10748987 |
T |
|
| Q |
540 |
tgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccacgcaaaatcaataatttgag |
639 |
Q |
| |
|
|||| || |||| | ||| ||||||||||||||||||||| |||||| |||||||||| ||| | | || |||||| | || | | || |||||| |
|
|
| T |
10748988 |
tgtttccccaaacatttattagttgaagctttttcaaagagccaatttcaattggtattttgccaatcacattgttccctcccacatttaagcctttgag |
10749087 |
T |
|
| Q |
640 |
attcgagcaatatgtcaggtttgtaggaat |
669 |
Q |
| |
|
||| ||||||||||||| ||||| |||||| |
|
|
| T |
10749088 |
attggagcaatatgtcaagtttgaaggaat |
10749117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 10764610 - 10764843
Alignment:
| Q |
42 |
gtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaa |
141 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||||||||| || ||| ||| ||||||||||||| || ||||||||| | ||||| |||||| |
|
|
| T |
10764610 |
gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa |
10764709 |
T |
|
| Q |
142 |
attcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacct |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||| |||||| ||||| || ||||| | ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10764710 |
attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtacct |
10764806 |
T |
|
| Q |
242 |
gagaattgatttgctgcaaacgtgaatatttgaagat |
278 |
Q |
| |
|
|||||||||||| || |||| | ||||||| ||||| |
|
|
| T |
10764807 |
gagaattgatttcctccaaaatttaatattttaagat |
10764843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 40 - 256
Target Start/End: Complemental strand, 10563760 - 10563547
Alignment:
| Q |
40 |
tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt |
139 |
Q |
| |
|
||||||||| ||||| |||||||| |||| ||| |||||||| ||| ||||| |||||||||||||||| || ||| |||| | ||||||||||| |
|
|
| T |
10563760 |
tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgt |
10563661 |
T |
|
| Q |
140 |
aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac |
239 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||||||| ||| | ||||||| | ||||||||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
10563660 |
aacttctctagacttggaacttgtcccaccaaata---gttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggac |
10563564 |
T |
|
| Q |
240 |
ctgagaattgatttgct |
256 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10563563 |
ctgagaattgatttgct |
10563547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 50 - 669
Target Start/End: Original strand, 10742185 - 10742804
Alignment:
| Q |
50 |
caattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgcta |
149 |
Q |
| |
|
||||| ||||||||| ||| ||| |||||| || | |||| |||||||||||||||| || |||||||||| | |||||| ||||| ||| | | |
|
|
| T |
10742185 |
caatttgtcaaatatcttaaaaacattaaatctatggctgaattgttacctaaattgttagactgcaaatttaatctttgaagatcctgtaacttcccaa |
10742284 |
T |
|
| Q |
150 |
gacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacctgagaattg |
249 |
Q |
| |
|
|| |||||||||||||||||||||| | | | ||||| || | | ||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10742285 |
gatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattggacctgtgaattg |
10742384 |
T |
|
| Q |
250 |
atttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattttgtgttattgtgaggccaata |
349 |
Q |
| |
|
|||| || |||| || || |||||||| ||| ||||||||||||| ||||| |||||||| | |||||| || || || || | |
|
|
| T |
10742385 |
atttactccaaattcaaaaataattagattgggtaggttgtggaacatgttaaatggaagagagccattgaagttattcatgactagtgaaagctcagtc |
10742484 |
T |
|
| Q |
350 |
agtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaaaattgtcaagtgtttgaggaaacatatttcttgtg |
449 |
Q |
| |
|
||| |||| ||||| |||| ||||||||||| | |||| ||||||| ||| | ||||| | |||| | |||| | ||| || |||||||||||||| |
|
|
| T |
10742485 |
agtaatgacatattgtaaatacaagaaggaaccataccagacaaatagtttacacccatatataaacctctcaaattttttagacgacatatttcttgtg |
10742584 |
T |
|
| Q |
450 |
gaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatgaagggattcctccggttaaattgttattccg |
549 |
Q |
| |
|
||||||| || || || ||||| || ||| || | || |||| ||||||||||| |||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
10742585 |
gaatatccccttctaagttgtttgaaggaaccgaaaaaagcattaaacttgaaagattccctatggatgaagagattcctccagttaaattgttattcca |
10742684 |
T |
|
| Q |
550 |
aacagtcatttcttgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccacgcaaaatcaataatttgagattcgagcaa |
649 |
Q |
| |
|
|||| ||| | |||||| ||||||||| |||| |||||| |||||||||| ||| | | | |||||| |||| | | | ||| ||||| |||||| |
|
|
| T |
10742685 |
aacactcaatgattgaagttttttcaaatagccaatttcaattggtattttgccaatcaacttgttccctgccaaagttatgactttcagatttgagcaa |
10742784 |
T |
|
| Q |
650 |
tatgtcaggtttgtaggaat |
669 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
10742785 |
tatgtcaagtttgtaggaat |
10742804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 345 - 459
Target Start/End: Original strand, 10764875 - 10764989
Alignment:
| Q |
345 |
caataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaaaattgtcaagtgtttgaggaaacatatttc |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || | | ||||| |||||||| ||||||| ||||||||| |
|
|
| T |
10764875 |
caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttc |
10764974 |
T |
|
| Q |
445 |
ttgtggaatatctcc |
459 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10764975 |
ttgtggaatatctcc |
10764989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 600
Target Start/End: Complemental strand, 10557277 - 10557096
Alignment:
| Q |
419 |
gtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatg |
518 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||| || ||||||| ||||| || ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
10557277 |
gtcaagtgttttaggcgacatatttcttggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatg |
10557178 |
T |
|
| Q |
519 |
aagggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcagttggtatttt |
600 |
Q |
| |
|
|||| ||||||| | ||| |||| | | |||| ||| |||||||||||||| | |||||| |||||| |||||||||| |
|
|
| T |
10557177 |
gtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagcctatttcaattggtatttt |
10557096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 491 - 669
Target Start/End: Original strand, 11049796 - 11049974
Alignment:
| Q |
491 |
gttaagcttgaaagatttcctatgaatgaagggattcctccggttaaattgttattccgaacagtcatttcttgaagctttttcaaagagccgatttcag |
590 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| || || |||| || | || | |||||| |||||||||||||| |||||| |
|
|
| T |
11049796 |
gttaagcttgaaagattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagccaatttcat |
11049895 |
T |
|
| Q |
591 |
ttggtattttaccattgagatggttcccacgcaaaatcaataatttgagattcgagcaatatgtcaggtttgtaggaat |
669 |
Q |
| |
|
||||||| || ||| | | || |||||| | |||| ||| ||| ||||| ||||||| ||| |||||||||||||| |
|
|
| T |
11049896 |
ttggtatcttgccaattaaattgttccctcccaaatacaagtctttaagattggagcaatgtgtgaggtttgtaggaat |
11049974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 10218434 - 10218539
Alignment:
| Q |
275 |
agattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattttgtgttattgtgaggccaataagtgatgagatattataaagacaag |
374 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||| || |||||| ||||| |||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
10218434 |
agattggggagggcatgaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag |
10218533 |
T |
|
| Q |
375 |
aaggaa |
380 |
Q |
| |
|
|||||| |
|
|
| T |
10218534 |
aaggaa |
10218539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 350 - 543
Target Start/End: Original strand, 10718681 - 10718874
Alignment:
| Q |
350 |
agtgatgagatattataaagacaagaaggaatcttaccggacaaattgttcagacccacacctaaaattgtcaagtgtttgaggaaacatatttcttgtg |
449 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||| ||||||||||| || | || |||||||||||||| |||||| |||||||||| ||| |
|
|
| T |
10718681 |
agtgatgagatattgtaaaaacaagaaggaattataccagacaaattgttaggatctgcatataaaattgtcaagtttttgagacgacatatttctggtg |
10718780 |
T |
|
| Q |
450 |
gaatatctccctcaaaattgttactagaaactgatagaaatgttaagcttgaaagatttcctatgaatgaagggattcctccggttaaattgtt |
543 |
Q |
| |
|
||||| |||| || || |||||| || ||| || || ||| | |||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
10718781 |
gaataactccgtctaagttgttataaggaaccgaaagtccccataaacatgaaagatttcccatgaatgaagggattcctccagttaaattgtt |
10718874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 563 - 669
Target Start/End: Complemental strand, 10563240 - 10563134
Alignment:
| Q |
563 |
tgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccacgcaaaatcaataatttgagattcgagcaatatgtcaggtttg |
662 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| ||| | | | |||||| | ||||||||| | ||||||| ||||||||||||| ||||| |
|
|
| T |
10563240 |
tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg |
10563141 |
T |
|
| Q |
663 |
taggaat |
669 |
Q |
| |
|
||||||| |
|
|
| T |
10563140 |
taggaat |
10563134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 7191579 - 7191464
Alignment:
| Q |
202 |
tagggcagaagcatttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacg-tgaatatttgaagattggggagggtgtggaacatgtt |
300 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||| |||||||||||||||| || | | | | |||| ||||||||||| |||||||| |||||| || |
|
|
| T |
7191579 |
tagggaagaagcatttgaaatggaaatagggattgtacctgagaattgatttcctccgattgctaaata-ttgaagattggagagggtgttgaacatatt |
7191481 |
T |
|
| Q |
301 |
gggtggaaaagagccat |
317 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
7191480 |
gggtggaagagatccat |
7191464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 10599656 - 10599548
Alignment:
| Q |
208 |
agaagcatttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtgga |
307 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||||||| ||||| | | | ||| || ||| ||||||||||| |||| |||||| ||||||||| |
|
|
| T |
10599656 |
agaagcatttgaaattgaagtagggattggacctgagaatttatttgatccgaccgtaaaatattggagattggggagagtgtagaacatattgggtgga |
10599557 |
T |
|
| Q |
308 |
aaagagcca |
316 |
Q |
| |
|
| ||||||| |
|
|
| T |
10599556 |
agagagcca |
10599548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 230 - 374
Target Start/End: Original strand, 11049578 - 11049722
Alignment:
| Q |
230 |
gggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttatttt |
329 |
Q |
| |
|
|||||||| ||||||||||||||| | ||| || | | ||| |||||||||| || || |||||||||||||||| |||||||| || |||||| |
|
|
| T |
11049578 |
gggattggtcctgagaattgatttcccccaatcgcacaaaattggagattggggaaggcatgaaacatgttgggtggaagagagccataaaagttattca |
11049677 |
T |
|
| Q |
330 |
gtgttattgtgaggccaataagtgatgagatattataaagacaag |
374 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
11049678 |
ttgttagtgtgagctcaataagtgatgagatattgtaaaaacaag |
11049722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 10653765 - 10653887
Alignment:
| Q |
130 |
aagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcc-taagtctaatacttgtagggcagaagcatttgcaatcgaaat |
228 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||| | |||||| || ||| | |||||| | | ||| ||||| ||||||||||||||| ||||| |
|
|
| T |
10653765 |
aagatcatgtaaattccccagacttggaacttgtccgagcaaatt-attttgatcagataagtcgagttcttttagggaagaagcatttgcaatggaaat |
10653863 |
T |
|
| Q |
229 |
agggattggacctgagaattgatt |
252 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
10653864 |
agggattgtacctgagaattgatt |
10653887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 10718431 - 10718508
Alignment:
| Q |
97 |
acctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaatt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| | | ||| |||||||||||||||||||||||| |
|
|
| T |
10718431 |
acctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaatt |
10718508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 10603321 - 10603213
Alignment:
| Q |
208 |
agaagcatttgcaatcgaaatagggattggacctgagaattgatttgctgcaaacgtgaatatttgaagattggggagggtgtggaacatgttgggtgga |
307 |
Q |
| |
|
||||||||| | ||| ||| | |||||||||||| |||||||||||| | ||| || || ||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10603321 |
agaagcattcgaaattgaagtggggattggacctaagaattgatttgatccaactgtaaaatattggagattggggagagtgtggaacatattgggtgga |
10603222 |
T |
|
| Q |
308 |
aaagagcca |
316 |
Q |
| |
|
| ||||||| |
|
|
| T |
10603221 |
agagagcca |
10603213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 10549133 - 10549086
Alignment:
| Q |
436 |
acatatttcttgtggaatatctccctcaaaattgttactagaaactga |
483 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
10549133 |
acatatttcttgtggaatatctccctccaaattgttataagaaactga |
10549086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 10557421 - 10557379
Alignment:
| Q |
275 |
agattggggagggtgtggaacatgttgggtggaaaagagccat |
317 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10557421 |
agattggggagggagttgaacatgttgggtggaagagagccat |
10557379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 10661721 - 10661771
Alignment:
| Q |
203 |
agggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt |
253 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||||| |||| |||| |
|
|
| T |
10661721 |
agggaagaagcatttgcaatggaaatagggattgtacctgaaaattcattt |
10661771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 7191648 - 7191604
Alignment:
| Q |
130 |
aagatcttgtaaattcgctagacttggaacttgtccaaccaaatt |
174 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
7191648 |
aagatcatgtaacttccctagacttggaacttgtccgaccaaatt |
7191604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 27725991 - 27726035
Alignment:
| Q |
499 |
tgaaagatttcctatgaatgaagggattcctccggttaaattgtt |
543 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
27725991 |
tgaaagatttcctataaatgaagggatttctcctgtcaaattgtt |
27726035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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