View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20013_low_5 (Length: 388)
Name: NF20013_low_5
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 1410906 - 1410710
Alignment:
| Q |
22 |
ttcctccacctcatcatgttcttgtagatctgcaagagaaaagctcctagacttaaagctccctaatctaagcctcatatgattagcataagattgaggc |
121 |
Q |
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| T |
1410906 |
ttcctccacctcatcatgttcttgtagatctgcaagagaaaagctcctagacttaaagctgcctaatctaagcctcatatgattagcataagattgaggc |
1410807 |
T |
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| Q |
122 |
attctattattaaactgtctcatcatcacttcttcttgtggattcttcttttcctccattgaagaagatgaagatgatggtgatccttttgttgtga |
218 |
Q |
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| T |
1410806 |
attctattattaaactgtctcatcatcacttcttcttgtggattcttcttttcctccattgaagaagatgaagatgatggtgatccttttgttgtga |
1410710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 1410667 - 1410564
Alignment:
| Q |
267 |
cagacaaaagaggcattgattttggattgaaacaagaataaaaagatttccttgataactttgatgcaattaaaagccttctcctcttgttgaatggatt |
366 |
Q |
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| T |
1410667 |
cagacaaaagaggcattgattttggattgaaacaagaataaaaagatttccttgataactttgatgcaattaaaagccttctcctcttgttgaatggatt |
1410568 |
T |
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| Q |
367 |
ctct |
370 |
Q |
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|||| |
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| T |
1410567 |
ctct |
1410564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 17036231 - 17036149
Alignment:
| Q |
278 |
ggcattgattttggattgaaacaagaataaaaagatttccttgataactttgatgcaattaaaagccttctcctcttgttgaa |
360 |
Q |
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| T |
17036231 |
ggcattggttttgggttgaaacaagaatgaatagactttcttgataacttggatgcaatcaaaagccttctccttttgttgaa |
17036149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 17036343 - 17036282
Alignment:
| Q |
154 |
ttcttgtggattcttcttttcctccattgaagaagatgaagatgatggtgatccttttgttgtga |
218 |
Q |
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| T |
17036343 |
ttcttgtggattcttcttttcctcaatt---gaagatgaagacgagggtgatccttttgttgtga |
17036282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 17036409 - 17036356
Alignment:
| Q |
31 |
ctcatcatgttcttgtagatctgcaagagaaaagctcctagacttaaagctccc |
84 |
Q |
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| T |
17036409 |
ctcatcatgttcttgtaggtctgcaagagtaaagctcctaaacttgaagctccc |
17036356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 50336575 - 50336624
Alignment:
| Q |
32 |
tcatcatgttcttgtagatctgcaagagaaaagctcctagacttaaagct |
81 |
Q |
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| T |
50336575 |
tcatcatgttcttgtagatctgcaagagaataactccttgacttgaagct |
50336624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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