View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20013_low_6 (Length: 366)
Name: NF20013_low_6
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 5603407 - 5603744
Alignment:
| Q |
18 |
ttggaaagtttt-ttccccatcgctaactgtcttatgcatctttccgataaacatcttgacttctgtcatagaagaacagttcaataatgatcaaacttg |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603407 |
ttggaaagtttttttccccatcgctaactgtcttatgcatctttccgataaacatcttgacttctgtcatagaagaacagttcaataatgatcaaacttg |
5603506 |
T |
|
| Q |
117 |
aatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatttcaaagttttgcactatgattaatgtgatttttaattcatcttta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5603507 |
aatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatttcaaagttttgcactatgattaatgtgatttttaattcatgttta |
5603606 |
T |
|
| Q |
217 |
gttattcttttggaagnnnnnnnnttaaaacattttgtgttttatggatgcaagttgtcttggtcattcatttgatagtaattttgatacctcctactat |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5603607 |
gttattcttttggaagaaaaaaaaaaaaaacattttgtgttttatggatgcaagttgtcttggtcattcatttaatagtaattttgatacctcctactat |
5603706 |
T |
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| Q |
317 |
tataaagttagtttgatattgaataaactacagattct |
354 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| |
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| T |
5603707 |
tataaagttagtttgataatgaataaactacatattct |
5603744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 5631963 - 5631626
Alignment:
| Q |
18 |
ttggaaagtttttt-ccccatcgctaactgtcttatgcatctttccgataaacatcttgacttctgtcatagaagaacagttcaataatgatcaaacttg |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631963 |
ttggaaagtttttttccccatcgctaactgtcttatgcatctttccgataaacatcttgacttctgtcatagaagaacagttcaataatgatcaaacttg |
5631864 |
T |
|
| Q |
117 |
aatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatttcaaagttttgcactatgattaatgtgatttttaattcatcttta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5631863 |
aatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatttcaaagttttgcactatgattaatgtgatttttaattcatgttta |
5631764 |
T |
|
| Q |
217 |
gttattcttttggaagnnnnnnnnttaaaacattttgtgttttatggatgcaagttgtcttggtcattcatttgatagtaattttgatacctcctactat |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5631763 |
gttattcttttggaagaaaaaaaaaaaaaacattttgtgttttatggatgcaagttgtcttggtcattcatttaatagtaattttgatacctcctactat |
5631664 |
T |
|
| Q |
317 |
tataaagttagtttgatattgaataaactacagattct |
354 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| |
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| T |
5631663 |
tataaagttagtttgataatgaataaactacatattct |
5631626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 5649299 - 5649187
Alignment:
| Q |
242 |
taaaacattttgtgttttatggatgcaagttgtcttggtcattcatttgatagtaattttgatacctcctactattataaagttagtttgatattgaata |
341 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5649299 |
taaaacattttttgtttgatggatgcaagttgtctttgtcattcatttgatagtaattttgatacctcctactattataaagttagtttgataatgaata |
5649200 |
T |
|
| Q |
342 |
aactacagattct |
354 |
Q |
| |
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||||||| ||||| |
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| T |
5649199 |
aactacatattct |
5649187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 5649766 - 5649671
Alignment:
| Q |
18 |
ttggaaagttttttccccatcgctaactgtcttatgcatctttccgataaacatcttgacttctgtcatagaagaacagttcaataatgatcaaacttga |
117 |
Q |
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||||||||||||||||| ||||||||| |||||| ||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
5649766 |
ttggaaagttttttccc-atcgctaacagtcttacgcatctt-ctgataaacatcttgacttctgccatagac---cagttcaataatgatcaaacttga |
5649672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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