View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20013_low_9 (Length: 333)
Name: NF20013_low_9
Description: NF20013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20013_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 47529361 - 47529057
Alignment:
| Q |
17 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccacgaaaactatctcagcaaccttgtgaccataaatccttatggtagccaccgaaat |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47529361 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccaagaaaactatctcagcaaccttgtgaccataaatccttatagtagccaccgaaat |
47529262 |
T |
|
| Q |
117 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgcttatgtaccgagtctctactaaaaacaatgtctctaatcaactct |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47529261 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgcttatgtaccgagtctctactaaaaacaatgtctctaatcaactct |
47529162 |
T |
|
| Q |
217 |
cttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaactcatcagaagaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47529161 |
cttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaactcatcagaagaaa |
47529062 |
T |
|
| Q |
317 |
aatct |
321 |
Q |
| |
|
||||| |
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|
| T |
47529061 |
aatct |
47529057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 47523989 - 47523704
Alignment:
| Q |
17 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccacgaaaactatctcagcaaccttgtgaccataaatccttatggtagccaccgaaat |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| || || |||||| || || ||||||||||| |||||||| ||||||||||||||||| || || |||||||| |
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| T |
47523989 |
acaaacgacacattccttgtcttcgatattgttccttggtagctacaaaaactatctctgcaaccttttgaccataaatccttatagttgcaaccgaaat |
47523890 |
T |
|
| Q |
117 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgcttatgtaccgagtctctactaaaaacaatgtctctaatcaactct |
216 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| | |||||||||||| |||||| ||| ||||||||||||||| ||| ||||||| ||| |
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| T |
47523889 |
gactttacccattttctctaaaatcacattatagaaactatgaaagttcaagcgtttatgttgtgagcctctactaaaaacaacatctttaatcaattct |
47523790 |
T |
|
| Q |
217 |
cttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaa |
302 |
Q |
| |
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||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||| |
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| T |
47523789 |
cttccggataaagcatcaatagttgggttaaaactctcatacaatacatcaagagccatattcaactttatcttcttttgactaaa |
47523704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 47551038 - 47550888
Alignment:
| Q |
17 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccacgaaaactatctcagcaaccttgtgaccataaatccttatggtagccaccgaaat |
116 |
Q |
| |
|
|||||| |||||||||||||| ||||| || ||| |||||||||| |||||| |||||||||||||| |||||||||||||||| ||| ||||| || | |
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| T |
47551038 |
acaaacaacacattccttgtcttcgatatttttttttggtggccatgaaaacaatctcagcaaccttttgaccataaatccttacggttgccacataact |
47550939 |
T |
|
| Q |
117 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaa |
167 |
Q |
| |
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||||| || |||||| | ||||||| |||||||||||| ||||||||| |
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|
| T |
47550938 |
cactttaccccctttctctataatcacagtatagaaaccacgaaagttcaa |
47550888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 44870437 - 44870733
Alignment:
| Q |
17 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccacgaaaactatctcagcaaccttgtgaccataaatccttatggtagccaccgaaat |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| ||||| ||||||||||| |||||||| |||||| |||||||||| || ||||||||||| |
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| T |
44870437 |
acaaacgacacattcctcgtcctcgatgttgctccttggtagccacaaaaactatctctgcaaccttttgaccaaaaatccttatagttgccaccgaaat |
44870536 |
T |
|
| Q |
117 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgcttatgtaccgagtctctactaaaaacaatgtctctaatcaactct |
216 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| ||||||||||| |||||| | || |||||||||||||||| ||| ||||||||||| |
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|
| T |
44870537 |
cacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgtttatgttctgaatctctactaaaaacaagatctttaatcaactct |
44870636 |
T |
|
| Q |
217 |
cttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaactcatcagaag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||| |||||| |||||| |||||||||||||| ||||| |
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| T |
44870637 |
cttccagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctgcattcaacttatgcttctcttgactaaactcattagaag |
44870733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 9819590 - 9819878
Alignment:
| Q |
17 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccacgaaaactatctcagcaaccttgtgaccataaatccttatggtagccaccgaaat |
116 |
Q |
| |
|
||||| ||||||||||||||| ||||| || || |||||||||||||||||||| ||| |||||||| |||||||||||||||| || ||||| ||||| |
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|
| T |
9819590 |
acaaatgacacattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaat |
9819689 |
T |
|
| Q |
117 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgcttatgtaccgagtctctactaaaaacaatgtctctaatcaactct |
216 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||| || ||| | || ||||| |||||||||| ||| ||||||||||| |
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|
| T |
9819690 |
cacttcacccattttctccaaaattacattatagaaaccacaaaagtttaagcgattgtgttctgattctctgctaaaaacaacatctttaatcaactct |
9819789 |
T |
|
| Q |
217 |
cttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaactc |
305 |
Q |
| |
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||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||||||| ||| ||||||| || ||||||| ||||||| |
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|
| T |
9819790 |
cttcctgataaagcatcaaaagttggattaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactc |
9819878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 9854390 - 9854102
Alignment:
| Q |
17 |
acaaacgacacattccttgtcctcgatgttctttcttggtggccacgaaaactatctcagcaaccttgtgaccataaatccttatggtagccaccgaaat |
116 |
Q |
| |
|
||||| |||| |||||||||| ||||| || || |||||||||||||||||||| ||| |||||||| |||||||||||||||| || ||||| ||||| |
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|
| T |
9854390 |
acaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaat |
9854291 |
T |
|
| Q |
117 |
cacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcgcttatgtaccgagtctctactaaaaacaatgtctctaatcaactct |
216 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||| || ||| | || ||||| |||||||||| ||| ||||||||||| |
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| T |
9854290 |
cacttcacccattttctccaaaattacattatagaaaccacaaaagtttaagcgattgtgttctgattctctgctaaaaacaacatctttaatcaactct |
9854191 |
T |
|
| Q |
217 |
cttccagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaactc |
305 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||||||| ||| ||||||| || ||||||| ||||||| |
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|
| T |
9854190 |
cttcctgataaagcatcaaaagttggattaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactc |
9854102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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