View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20014_high_1 (Length: 463)
Name: NF20014_high_1
Description: NF20014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20014_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Complemental strand, 38995377 - 38994946
Alignment:
| Q |
16 |
atgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatttaagtattaaataatatagtagtatgcaaggtatatgtttagaggaagcaaat |
115 |
Q |
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| T |
38995377 |
atgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatttaagtattaaataatatagtagtatgcaaggtatatgtttagaggaagcaaat |
38995278 |
T |
|
| Q |
116 |
ttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaattatgaaagactcatgttcattgaaaattagaggtgtaaatcaaatgcagaggtat |
215 |
Q |
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| T |
38995277 |
ttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaattatgaaagactcatgttcattgaaaattagaggtgtaaatcaaatgcagaggtat |
38995178 |
T |
|
| Q |
216 |
gtcttatggcatgaaacaagtttaacaaagctgcaattgttataatagatctcatgccttttagtgtgagattctttacaatatgtacatgtttcataca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38995177 |
gtcttatggcatgaaacaagtttaacaaagctgcaattgttataatagatctcatgccttttagtgtgagattctttacaatatgtacatgtttcataca |
38995078 |
T |
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| Q |
316 |
acaaataacacaggtttgttcaaaaacaaataacacaggaaatttattggtatttggttttgtgatattgctgactgtattcattttctttactctttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38995077 |
acaaataacacaggtttgttcaaaaacaaataacacaggaaatttattggtatttggttttgtgatattgctgactgtattcattttctttactctttct |
38994978 |
T |
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| Q |
416 |
ttattctactatcagtttaggattctcctatt |
447 |
Q |
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| T |
38994977 |
ttattctactatcagtttaggattctcctatt |
38994946 |
T |
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