View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20014_low_2 (Length: 387)
Name: NF20014_low_2
Description: NF20014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20014_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 71 - 370
Target Start/End: Original strand, 15997110 - 15997409
Alignment:
| Q |
71 |
ccgtaataagttgttaggagctaaatttcctcctgtaacgtccatgcaatctactatttgcattttgatctagtcaagaaaccatgtgtctagaaagtta |
170 |
Q |
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| T |
15997110 |
ccgtaataagttgttaggagctaaatttcctcctgtaacatccatgcaatctactatttgcattttgatctagtcaagaaaccatgtgtctagaaagtta |
15997209 |
T |
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| Q |
171 |
ccaaaagtcgaagcatggaattgttagaatccgatgaaagtaagcatacctctctgatctatgtgacattagacataaaggtaagacttataagactact |
270 |
Q |
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| T |
15997210 |
ccaaaagtcgaagcatggaattgttagaatccgatgaaagtaagcatacctctctgatctatgtgacattagacataaaggtaagacttataagactact |
15997309 |
T |
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| Q |
271 |
agaaaaccaaatacacaacatagaagcttgaaatctgagcattaagaaattattttagatacataataaaatctgatcaatgttattgcaagtcaaccct |
370 |
Q |
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| T |
15997310 |
agaaaaccaaatacacaacatagaagcttgaaatatgagcattaagaaattatcttagatacataataaaatctgatcaatgttattgcaagtcaaccct |
15997409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 15997076 - 15997106
Alignment:
| Q |
11 |
caaaggtgatgaattataggacaaagacaac |
41 |
Q |
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| T |
15997076 |
caaaggtgatgaattataggacaaagacaac |
15997106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 14653686 - 14653742
Alignment:
| Q |
49 |
tggtgagaatgattgacctttcccgtaataagttgttaggagctaaatttcctcctg |
105 |
Q |
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| T |
14653686 |
tggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctg |
14653742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 14663477 - 14663533
Alignment:
| Q |
49 |
tggtgagaatgattgacctttcccgtaataagttgttaggagctaaatttcctcctg |
105 |
Q |
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| T |
14663477 |
tggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctg |
14663533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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