View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20014_low_3 (Length: 256)
Name: NF20014_low_3
Description: NF20014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20014_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 37120481 - 37120727
Alignment:
| Q |
1 |
ataccgtcattcaaaaccgtcatttactcgagccgatttattgtcttgaagaaaataacaacatctattttcnnnnnnnttacacggtggttagaaaaag |
100 |
Q |
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| T |
37120481 |
ataccgtcattcaaaaccgtcatttactcgagccgatttattgtcttgaagaaaataacaacatttattttcaaaaatattacacggtggttagaaaaag |
37120580 |
T |
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| Q |
101 |
aaaaagaggaattggaatttattt-tttatgcaaattaaggttagtctcaatatgtaacaagaaaaaagcgtggaactttgaggcacttcctgatgctac |
199 |
Q |
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| T |
37120581 |
aaaaagaggaattggaatttatttatttatgcaaattaaggttagtctcaatatgtaacaagaaaaaagcgtggaactttgaggcacttcctgatgctac |
37120680 |
T |
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| Q |
200 |
cattgttgaagctcttgaattttggttggcaattcaatttgcctatg |
246 |
Q |
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| T |
37120681 |
cattgttgaagctcttggactttggttggcaattcaatttgcctatg |
37120727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 50732886 - 50732814
Alignment:
| Q |
174 |
aactttgaggcacttcctgatgctaccattgttgaagctcttgaattttggttggcaattcaatttgcctatg |
246 |
Q |
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| T |
50732886 |
aactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
50732814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 50779969 - 50780041
Alignment:
| Q |
174 |
aactttgaggcacttcctgatgctaccattgttgaagctcttgaattttggttggcaattcaatttgcctatg |
246 |
Q |
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| T |
50779969 |
aactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatg |
50780041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 18927542 - 18927467
Alignment:
| Q |
171 |
tggaactttgaggcacttcctgatgctaccattgttgaagctcttgaattttggttggcaattcaatttgcctatg |
246 |
Q |
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| T |
18927542 |
tggaactttgaggcacttcctgatgctaccattgttgaagctcttagatttaggttggcaattcaattttcctatg |
18927467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 4358579 - 4358619
Alignment:
| Q |
201 |
attgttgaagctcttgaattttggttggcaattcaatttgc |
241 |
Q |
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| T |
4358579 |
attgttgaagctcttgaatttcgattggcaattcaatttgc |
4358619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 45338784 - 45338854
Alignment:
| Q |
176 |
ctttgaggcacttcctgatgctaccattgttgaagctcttgaattttggttggcaattcaatttgcctatg |
246 |
Q |
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| T |
45338784 |
ctttgaggcgcttcctgaagctaacattgctgaagctcttggatttcagttggcaattcaatttgcctatg |
45338854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 26195118 - 26195044
Alignment:
| Q |
171 |
tggaactttgaggcacttcctgatgctaccattgttgaagctcttgaattttggttggcaattcaatttgcctat |
245 |
Q |
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| T |
26195118 |
tggaactttgttgcgcttcctgatgctaacatcgctgaagctcttgaattttggttgtcaatttaatttgtctat |
26195044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 10349791 - 10349717
Alignment:
| Q |
171 |
tggaactttgaggcacttcctgatgctaccattgttgaagctcttgaattttggttggcaattcaatttgcctat |
245 |
Q |
| |
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|||||||||||||| |||| |||||||| |||| | ||| ||||| |||||||||| |||||||||||| |||| |
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| T |
10349791 |
tggaactttgaggcgcttcttgatgctaatattgctaaagttcttggattttggttgccaattcaatttgtctat |
10349717 |
T |
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