View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20014_low_4 (Length: 244)
Name: NF20014_low_4
Description: NF20014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20014_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 13145489 - 13145702
Alignment:
| Q |
16 |
attatcaagataaactcttgcattatcataagtagctgcaaattcaccatctgaaggccaaccactttccgacacaacaaccttaacaaaaccaattcca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
13145489 |
attatcaagataaactcttgcattatcataagtagctgcaaatccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattcca |
13145588 |
T |
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| Q |
116 |
gtattgtcaagtgcagcatgtaatgaatccaacaaagcatcaaatagattttggtatccccttgaaccatccctaaccacaacattaggagaagtgaata |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13145589 |
gtattgtcaattgcagcatgtaatgaatccaacaaagcatcaaatagattttggtatccccttgaaccatccctaaccacaacattaggagaagtgaata |
13145688 |
T |
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| Q |
216 |
aagcatattgaagt |
229 |
Q |
| |
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|||||||||||||| |
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| T |
13145689 |
aagcatattgaagt |
13145702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 13152253 - 13152466
Alignment:
| Q |
16 |
attatcaagataaactcttgcattatcataagtagctgcaaattcaccatctgaaggccaaccactttccgacacaacaaccttaacaaaaccaattcca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
13152253 |
attatcaagataaactcttgcattatcataagtagttgcaaatccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattcca |
13152352 |
T |
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| Q |
116 |
gtattgtcaagtgcagcatgtaatgaatccaacaaagcatcaaatagattttggtatccccttgaaccatccctaaccacaacattaggagaagtgaata |
215 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13152353 |
gtattatcaattgcagcatgtaatgaatccaacaaagcatcaaatagattttggtatccccttgaaccatcccaaaccacaacattaggagaagtgaata |
13152452 |
T |
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| Q |
216 |
aagcatattgaagt |
229 |
Q |
| |
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|||||||||||||| |
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| T |
13152453 |
aagcatattgaagt |
13152466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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