View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20015_low_1 (Length: 775)

Name: NF20015_low_1
Description: NF20015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20015_low_1
NF20015_low_1
[»] chr3 (7 HSPs)
chr3 (17-236)||(1653387-1653606)
chr3 (455-579)||(1653802-1653926)
chr3 (641-757)||(1653990-1654106)
chr3 (346-394)||(1653693-1653741)
chr3 (58-161)||(20611251-20611354)
chr3 (82-201)||(17501769-17501888)
chr3 (82-228)||(19175882-19176028)
[»] chr7 (3 HSPs)
chr7 (29-193)||(38305674-38305839)
chr7 (29-206)||(3420141-3420319)
chr7 (58-157)||(47326382-47326481)
[»] chr1 (6 HSPs)
chr1 (487-577)||(26841797-26841887)
chr1 (29-197)||(41919892-41920062)
chr1 (645-751)||(26841622-26841725)
chr1 (63-228)||(24685026-24685191)
chr1 (349-394)||(13986965-13987010)
chr1 (89-184)||(4651227-4651322)
[»] chr4 (1 HSPs)
chr4 (83-228)||(30963842-30963987)
[»] chr8 (7 HSPs)
chr8 (88-228)||(34866599-34866739)
chr8 (645-724)||(15049701-15049780)
chr8 (487-577)||(15049862-15049952)
chr8 (132-228)||(9519020-9519116)
chr8 (83-197)||(34389550-34389664)
chr8 (29-117)||(31210563-31210658)
chr8 (38-229)||(10551706-10551891)
[»] chr2 (5 HSPs)
chr2 (66-161)||(39339351-39339446)
chr2 (89-207)||(31902927-31903045)
chr2 (82-232)||(2062217-2062367)
chr2 (355-394)||(9561543-9561582)
chr2 (174-232)||(27739124-27739182)
[»] chr6 (2 HSPs)
chr6 (89-206)||(12793538-12793655)
chr6 (47-206)||(16510789-16510948)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 1653387 - 1653606
Alignment:
Q  17 caccaaaactagataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaa 116  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  1653387 caccaaaactgaataacctccaccaccactgcatcaccactaccaacactgcattacaacgttgacaaacctcctcacgaagaaacaggcagcaacacaa 1653486  T
Q  117 acatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccag 216  Q
    ||||| |||||| ||||||| ||||||||||| |||||||| ||||| ||||  |||||||||| |||||||||||||||||||||||||||||| ||||    
T  1653487 acataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaaggttgccgccag 1653586  T
Q  217 tgacaaggagaaggcgcaac 236  Q
    ||||||||||||||||||||    
T  1653587 tgacaaggagaaggcgcaac 1653606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 455 - 579
Target Start/End: Original strand, 1653802 - 1653926
Alignment:
Q  455 gtccccctggagaagtcggaacagctaacagaaacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccat 554  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1653802 gtccccccggagaagtcggaacagctgacagaaacacacactacacaaccacaaccacccacctcttacccgctagtgaaccattaacgaccacccccat 1653901  T
Q  555 aacgacctttcactggcgcaacaga 579  Q
    |||||||| ||||||||||||||||    
T  1653902 aacgacctctcactggcgcaacaga 1653926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 641 - 757
Target Start/End: Original strand, 1653990 - 1654106
Alignment:
Q  641 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttga 740  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||||||||| ||||| |||    
T  1653990 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctgaacaccactcaaacacaccatggaaaccatacagaggagatga 1654089  T
Q  741 agaaaccaccacaaatc 757  Q
    |||||||||||||||||    
T  1654090 agaaaccaccacaaatc 1654106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 1653693 - 1653741
Alignment:
Q  346 gcaacacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653693 gcaacacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 1653741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 20611354 - 20611251
Alignment:
Q  58 accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacg 157  Q
    |||| ||||||||||| | | || ||||| |||||||||||||||||||| ||||||||| |||||| | |  |||||  ||||||||||| ||||||||    
T  20611354 accaccactgcatcactatgccgccaaacatcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaacacg 20611255  T
Q  158 agca 161  Q
    ||||    
T  20611254 agca 20611251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 17501769 - 17501888
Alignment:
Q  82 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 181  Q
    ||||| |||||||||| ||| ||| ||||||||||| |||||| | | ||||||| ||||| ||||| ||||||||  ||   |||  ||||||||||||    
T  17501769 caaacatcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcgg 17501868  T
Q  182 aaagacaacccagatcgtaa 201  Q
    ||| |||||| |||||||||    
T  17501869 aaacacaacctagatcgtaa 17501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 19176028 - 19175882
Alignment:
Q  82 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 181  Q
    ||||| |||||||||||||||| ||| || |||||||||| || |   || |||||||||||||||| |||||||| ||| | | ||  |||||||| ||    
T  19176028 caaacatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagagg 19175929  T
Q  182 aaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 228  Q
    ||  |||||||| ||| ||| ||||  ||| || |||||||||||||    
T  19175928 aaccacaacccatatcataaaaaggcagccgcctgtgacaaggagaa 19175882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 38305839 - 38305674
Alignment:
Q  29 ataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatatg 127  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| ||| |  |||| | |||||||||||||||| ||| ||||||||||||  || |     
T  38305839 ataacctccaccaccactgcatcaccaccaccgtcactgcatcactacgccaccaaaacatcctcaccaagaaacaagcaacaacacaaacatcaatcta 38305740  T
Q  128 ggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaaccca 193  Q
    | ||||||| ||||||||||| |||||||  ||| ||||||  |||||||||||||  ||||||||    
T  38305739 gaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaaccca 38305674  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 3420141 - 3420319
Alignment:
Q  29 ataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatatg 127  Q
    |||||||| ||||||||||||||||||| ||   ||||||||||| |||||| |||| | |||||||||||||||| ||| |||||||  |||| || |     
T  3420141 ataacctccaccaccactgcatcaccaccactgtcactgcatcactacgtcgccaaaacatcctcaccaagaaacaagcaacaacacatgcataaattta 3420240  T
Q  128 ggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaagg 206  Q
    | ||||||| ||| | ||||| |||||||||||| | ||||  ||| |||||||||  |||||| ||||| ||| ||||    
T  3420241 gaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaagg 3420319  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 47326382 - 47326481
Alignment:
Q  58 accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacg 157  Q
    |||| ||||||||||| ||| || ||||| |||||||||||||||| ||||||||||||| || ||| | | ||||||  ||||||||||| ||||||||    
T  47326382 accaccactgcatcactacgccgccaaacatcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacg 47326481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 487 - 577
Target Start/End: Complemental strand, 26841887 - 26841797
Alignment:
Q  487 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 577  Q
    ||||||||| ||||||| |||||||||||||| |  || ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  26841887 aacacacaccacacaactgcaaccacccacctttggccggctagtgaaccattaaccaccaccctcataacgacctctcactggtgcaaca 26841797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 41920062 - 41919892
Alignment:
Q  29 ataacctctaccaccactgcatcaccactac-caacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatat 126  Q
    |||||||| |||||| ||| ||||||||  | || ||||||||||| ||| || |||| | |||||||||||||||| ||| ||||||||||||| || |    
T  41920062 ataacctccaccacctctgaatcaccaccgcgcatcactgcatcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatct 41919963  T
Q  127 gggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatc 197  Q
     | ||||||  |||||| |||| |||||||| ||| | ||||| |||||||||||||  ||||||||||||    
T  41919962 agaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatc 41919892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 645 - 751
Target Start/End: Complemental strand, 26841725 - 26841622
Alignment:
Q  645 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttgaagaa 744  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||   || ||||  |||||| |||||| ||||| |||| ||||| ||||||     
T  26841725 aacttaacccaccaaaaactatctcgaaaacagccataaaaggaacatat---aacaccactgaaacaaaccatgaaaaccgtacagaggagatgaagag 26841629  T
Q  745 accacca 751  Q
    |||||||    
T  26841628 accacca 26841622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 24685026 - 24685191
Alignment:
Q  63 cactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcat 162  Q
    ||||||||||| ||| || ||||| |||||||||||||||| ||| ||||||||||||| || |   |  ||||||||| |||||| |||||||| |||     
T  24685026 cactgcatcactacgccgccaaacatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcag 24685125  T
Q  163 caacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 228  Q
    | ||||  ||||||||| |||  |||||||| ||| ||| ||| | ||| || |||||||||||||    
T  24685126 cgacgccggtttgaagcagaaccacaacccatatcataaaaagctggccgcctgtgacaaggagaa 24685191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 13987010 - 13986965
Alignment:
Q  349 acacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 394  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||    
T  13987010 acacccaaagaggacggcgacgcaaaaccaccacccactccttcgg 13986965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 4651322 - 4651227
Alignment:
Q  89 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaa 184  Q
    |||||||||||||||| |||||||||||||||||||   | ||||||| ||| | ||||| ||||||| |||| | || |  ||||||||||||||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaaa 4651227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 30963987 - 30963842
Alignment:
Q  83 aaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgga 182  Q
    |||| |||||||||||||||| ||| ||||||||||||| || | | ||||||| ||||||||| | |||||||| ||||| ||||  |||||||| |||    
T  30963987 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtgga 30963888  T
Q  183 aagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 228  Q
    |  |||||||||||| ||| ||| | | | || |||||||||||||    
T  30963887 accacaacccagatcataaaaagatggtcgcctgtgacaaggagaa 30963842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 34866599 - 34866739
Alignment:
Q  88 tcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagac 187  Q
    |||||||||||||||| ||| ||||||||||||| || | | ||||||| ||||||||||| |||||||| ||| | ||||  |||||||||||||  ||    
T  34866599 tcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccac 34866698  T
Q  188 aacccagatcgtaacaaggttgccaccagtgacaaggagaa 228  Q
    ||||||| || ||| ||||  | | || |||||||||||||    
T  34866699 aacccaggtcataaaaaggcggtcgcctgtgacaaggagaa 34866739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 645 - 724
Target Start/End: Complemental strand, 15049780 - 15049701
Alignment:
Q  645 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaac 724  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || ||||   ||||| |||||||||||    
T  15049780 aacttaacccaccaaaaactagctcgaaaatagccataaatggaacatatctgaaaaccactaaaacaaaccatggaaac 15049701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 577
Target Start/End: Complemental strand, 15049952 - 15049862
Alignment:
Q  487 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 577  Q
    ||||||||| ||| |||||||||||| ||||| |  ||  |||||||||||||||| ||||||||||||||||||| |||| | |||||||    
T  15049952 aacacacaccacataaccgcaaccacacacctatggccgactagtgaaccattaaccaccacccccataacgacctctcaccgacgcaaca 15049862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 9519116 - 9519020
Alignment:
Q  132 aagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 228  Q
    ||||| ||| ||||||| |||||||| ||| | ||||| ||||||||||| || |||||||| || ||||||| |||||||||  ||||||||||||    
T  9519116 aagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaatgttgccacctttgacaaggagaa 9519020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 34389550 - 34389664
Alignment:
Q  83 aaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgga 182  Q
    |||| |||||||||||||||| ||| ||||||||||||| || | | ||| ||| |||| | |||| |||||||| ||| | ||||  ||||||||||||    
T  34389550 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcgga 34389649  T
Q  183 aagacaacccagatc 197  Q
    |  ||||||||||||    
T  34389650 agcacaacccagatc 34389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 31210563 - 31210658
Alignment:
Q  29 ataacctctaccaccactgcatcaccact-------accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaa 117  Q
    |||||||| ||||||||| ||||||||||       |||| ||||||||||| ||| || ||||| || |||||||||||||||||||||||||||    
T  31210563 ataacctccaccaccactacatcaccactgcgcatcaccaccactgcatcactacgccgccaaacatcgtcaccaagaaacaggcagcaacacaaa 31210658  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 10551891 - 10551706
Alignment:
Q  38 accaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagaca 137  Q
    ||||||||||||||||||| ||||      | ||| |||| ||||||||   ||| |||||||| || ||||||||||||||||||| | | |||||||     
T  10551891 accaccactgcatcaccaccacca------cttcataacgccgacaaacagtctctccaagaaatagacagcaacacaaacatagatctagaggaagacg 10551798  T
Q  138 aaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaag 229  Q
    ||| ||||||| ||| |||| ||| | ||||   ||||||||||||| || |||| |||| ||| |||| || |  | ||||||||||||||    
T  10551797 aaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaaggctgtcgtcggtgacaaggagaag 10551706  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 39339351 - 39339446
Alignment:
Q  66 tgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagca 161  Q
    |||||||| ||| || ||||| ||||||||||||||||| |||||||||||| |||||| | | ||||||  ||||||||||| ||||||||||||    
T  39339351 tgcatcactacgccgccaaacatcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagca 39339446  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 31902927 - 31903045
Alignment:
Q  89 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagaca 188  Q
    ||||| |||||||||  ||||||||| ||||||||| | | ||||||| ||| ||||||| |||||||| ||| | ||||  |||||||||||||| |||    
T  31902927 cctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacaca 31903026  T
Q  189 acccagatcgtaacaaggt 207  Q
    ||| ||||| ||| |||||    
T  31903027 acctagatcataaaaaggt 31903045  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 2062367 - 2062217
Alignment:
Q  82 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 181  Q
    |||||| |||||||||||||| || ||| ||||||||| ||||   | | ||||   || ||||||| |||||||| ||| | ||||  || ||||||||    
T  2062367 caaaccacctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcgg 2062268  T
Q  182 aaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaaggcg 232  Q
    ||| ||||||||||||||||  ||||  ||||| | |||||||||||||||    
T  2062267 aaacacaacccagatcgtaaacaggtatccaccggagacaaggagaaggcg 2062217  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 9561543 - 9561582
Alignment:
Q  355 aaagaggacggtggcgcaaaaccaccacccactccttcgg 394  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  9561543 aaagaggacgatgacgcaaaaccaccacccactccttcgg 9561582  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 27739182 - 27739124
Alignment:
Q  174 tgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaaggcg 232  Q
    ||||||||||| ||||| ||||||| || ||||| ||||| ||||||||| ||||||||    
T  27739182 tgaagcggaaacacaacgcagatcgaaaaaaggtggccactagtgacaagaagaaggcg 27739124  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 12793655 - 12793538
Alignment:
Q  89 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagaca 188  Q
    |||||||||||||||| ||||||||||||  |||||   | ||||||| ||||||| ||  |||||||| ||| | |||| ||||||||||| ||| |||    
T  12793655 cctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacaca 12793556  T
Q  189 acccagatcgtaacaagg 206  Q
    ||||| ||||||| ||||    
T  12793555 acccatatcgtaaaaagg 12793538  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 16510789 - 16510948
Alignment:
Q  47 gcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaac 146  Q
    |||| ||||| |||| |||| |||||| ||| || ||| | |||||||||||||||| ||| ||||||||||||| || | | ||||||| | |||||||    
T  16510789 gcataaccaccaccatcactacatcactacgccgccaaccatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaac 16510888  T
Q  147 aataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaagg 206  Q
    || |||||||| ||| | | ||  ||||||||| |||  |||||||| ||| ||| ||||    
T  16510889 aacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaagg 16510948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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