View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20015_low_2 (Length: 706)
Name: NF20015_low_2
Description: NF20015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20015_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 195 - 689
Target Start/End: Complemental strand, 35242208 - 35241713
Alignment:
| Q |
195 |
actgtgctttcagaatttgataaacaaccacatggattgttgtacgatttatggataaaatctattccacagataccaggaccttcgggtcagagtcagg |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35242208 |
actgtgctttcagaatttgataaacaaccacatggattgttgtacgatttatggataaaatctattccacagataccaggaccttccggtcagagtcagg |
35242109 |
T |
|
| Q |
295 |
ttatatatgatggctaaatgttcaatgttaataaccggttcttagtttcatatatagtgcaacgcagtcatatattactcaattttcaggccccaaacgt |
394 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35242108 |
ttatatatgatggctaaatgttcaatgttaataactggttcttagtttcatatatagtgcaacgcagtcatatattactcaattttcaggccccaaacat |
35242009 |
T |
|
| Q |
395 |
tggtgctataatggacaatacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcacaa |
494 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35242008 |
tggtgctataatggacaatacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcacaa |
35241909 |
T |
|
| Q |
495 |
ttctgtcattta-atacttcacaaaatcttgttagtagcttcagttatcaatttgaaatgacaatgatggaaatttagttgattcaatgtttatttttat |
593 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35241908 |
ttctgtcatttatatacttcacaaaatcttgttagtagcttcagttatcaatttgaaatgacaatgatggaaatttagttgattcgatgtttatttttat |
35241809 |
T |
|
| Q |
594 |
ttctaacaccaaggttttacaagtagtcaaaagctattgtcctgtgatttttcatcggatggaaatattctagcaagttgtgggaaaagcgggaag |
689 |
Q |
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| T |
35241808 |
ttctaacaccaaggttttacaagtagtcaaaagcttttgtcctgtgatttttcatcggatggaaatattctagcaagttgtgggaaaagcgggaag |
35241713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 195 - 678
Target Start/End: Complemental strand, 35247833 - 35247356
Alignment:
| Q |
195 |
actgtgctttcagaatttgataaacaaccacatggattgttgtacgatttatgg-ataaaatctattccacagataccaggaccttcgggtcagagtcag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| || ||| || || |||| ||| |||| || |||||||| |
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|
| T |
35247833 |
actgtgctttcagaatttgataaacaaccacatggattgttgtgcgacttctggaatttaaactat-------------ggaacttccagtgagagtcag |
35247747 |
T |
|
| Q |
294 |
gttatatatgatggctaaatgttcaatgttaataaccggttcttagtttcatatatagtgcaacgcagtcatatattactcaattttcaggccccaaacg |
393 |
Q |
| |
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||||||||| ||||||||||||||||||||||| | ||||||| ||||||| |||| ||||| || |||||||||||| ||||||||||||||||| | |
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| T |
35247746 |
gttatatataatggctaaatgttcaatgttaatcaatggttcttggtttcattcatagcgcaacacactcatatattacttaattttcaggccccaaaag |
35247647 |
T |
|
| Q |
394 |
ttggtgctataatggacaatacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcaca |
493 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| | |||||| |||||||||||| |||| ||||||||||| |
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| T |
35247646 |
ttggtgctacaatggacaatacccctcaaataattcgggataaatattctattcaacaccatgcaagtaagtttctattctttacatcgttggcatcaca |
35247547 |
T |
|
| Q |
494 |
attctgtcatttaat--acttcacaaaat-cttgttagtagctt--cagttat----caatttgaaatgacaatgatggaaatttagttgattcaatgtt |
584 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||||| ||| || ||| ||||| | || || | || |||||| |||| |||||||||| |
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|
| T |
35247546 |
attctgtcatttcataaacttcacaaaatccttgttagtatcttgccaactatattgcaattcgtaacttcagttat-gaaattaagtt-attcaatgtt |
35247449 |
T |
|
| Q |
585 |
tatttttatttctaacaccaaggttttacaagtagtcaaaagctattgtcctgtgatttttcatcggatggaaatattctagcaagttgtggga |
678 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||| | ||| ||||| ||||||| ||||||||||| |||||||| ||| |||||||| |||||| |
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|
| T |
35247448 |
tatttttatttcttaca-caaggttttctaagcaatcagaagcttatgtcctgcgatttttcatctgatggaaagattatagcaagtggtggga |
35247356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 283 - 484
Target Start/End: Complemental strand, 35272262 - 35272057
Alignment:
| Q |
283 |
gtcagagtcaggttatatatgatggctaaatgttcaatgttaataaccggttcttagtttcatatatagtgcaacgcagtcatat----attactcaatt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
35272262 |
gtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttggtttcatatatagtgcaacacagtcatatattaattactcaatt |
35272163 |
T |
|
| Q |
379 |
ttcaggccccaaacgttggtgctataatggacaatacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgc |
478 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |||||||||||||| |||| |||||||||| ||||||||||| || ||||||||||| |||| | | |
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| T |
35272162 |
ttcaggcccaaaacgttggtcctataatggaaaatacccctcaaataattccggatggatatgctattcaacaccttgagagtaaatttcttttctatac |
35272063 |
T |
|
| Q |
479 |
atcttt |
484 |
Q |
| |
|
|||||| |
|
|
| T |
35272062 |
atcttt |
35272057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 35242387 - 35242287
Alignment:
| Q |
13 |
attatactccttgcactactattcatttttcttataatatggataatttagcttgtgtgtaattgttctgtgaaggatacataagtttctcctgttctac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
35242387 |
attatactccttgcactactattcatttttcttataatatggataatttagcttgtgtgtaattgttctgtgaaggatacataagtttctactgttctac |
35242288 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
|
|
| T |
35242287 |
a |
35242287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 413 - 689
Target Start/End: Complemental strand, 35278768 - 35278495
Alignment:
| Q |
413 |
tacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcacaattctgtcatttaata--c |
510 |
Q |
| |
|
||||| |||||| |||| |||||| |||||||||||| | ||| ||||||||||||||||| | |||||||||||||||||||||||||||| ||| | |
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|
| T |
35278768 |
tacccgtcaaataattcaggatgggtattctattcaaagcattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatatac |
35278669 |
T |
|
| Q |
511 |
ttcacaaaatctt-gttagtagcttcagttatcaatttgaaatgacaatgatggaaatttagttgattcaatgtttatttttatttctaacaccaaggtt |
609 |
Q |
| |
|
||||||| | || ||||||| || ||| | |||||| ||||||| | |||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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|
| T |
35278668 |
ttcacaatttttttgttagtatct--agtga---atttgagatgacaaataaggaaatttagttgattcactgtttatttttatttcttaca-caaggtt |
35278575 |
T |
|
| Q |
610 |
ttacaagtagtcaaaagctattgtcctgtgatttttcatcggatggaaatattctagcaagttgtgggaaaagcgggaag |
689 |
Q |
| |
|
|| |||| |||| | || | |||||| ||||||||||| |||||||| ||| ||||||| ||||||| ||||||||| |
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|
| T |
35278574 |
ttccaagcggtcagacactttcgtcctgcgatttttcatcagatggaaagattgtagcaagcggtgggaacagcgggaag |
35278495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 362 - 447
Target Start/End: Complemental strand, 35284359 - 35284274
Alignment:
| Q |
362 |
tcatatattactcaattttcaggccccaaacgttggtgctataatggacaatacccctcaaatgattcgggatggatattctattc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
35284359 |
tcatatattactcaattttcaggccccaaacattggtgctataatggacaatacctatcaaataattcgggatggatattctattc |
35284274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 551 - 678
Target Start/End: Complemental strand, 35254080 - 35253954
Alignment:
| Q |
551 |
atgacaatgatggaaatttagttgattcaatgtttatttttatttctaacaccaaggttttacaagtagtcaaaagctattgtcctgtgatttttcatcg |
650 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| || |||| |||||| || |||||||| ||||| |||||| |
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|
| T |
35254080 |
atgacaattaaggaaatttagttgattaaatgtttatttttatttctaaca-caaggtatttcaagcggtcaaagtcttttgtcctgcgatttatcatcg |
35253982 |
T |
|
| Q |
651 |
gatggaaatattctagcaagttgtggga |
678 |
Q |
| |
|
|||||||| ||| |||||||| |||||| |
|
|
| T |
35253981 |
gatggaaagattgtagcaagtggtggga |
35253954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 35254355 - 35254301
Alignment:
| Q |
195 |
actgtgctttcagaatttgataaacaaccacatggattgttgtacgatttatgga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
35254355 |
actgtgctttcagaatttgataaacaaccacatggattgttgcatgatttctgga |
35254301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 35254212 - 35254120
Alignment:
| Q |
413 |
tacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcacaattctgtcattt |
505 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||||||||||| | || | |||||||| |||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
35254212 |
tacccctcaaataattctggaaggacattctattcaagagcttgcatgtaaatttatattctatacatcgttggcatcacaattctgtcattt |
35254120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 676
Target Start/End: Complemental strand, 35271954 - 35271830
Alignment:
| Q |
551 |
atgacaatgatggaaatttagttgattcaatgtttatttttatttctaacaccaaggttttacaagtagtcaaaagctattgtcctgtgatttttcatcg |
650 |
Q |
| |
|
|||||||| | ||| ||||| |||||||||||| |||| | |||| ||| | |||||||| ||| |||| ||||| |||||||||||||||||||| |
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|
| T |
35271954 |
atgacaattaaggacatttaattgattcaatgtctattctaattttaaactc-aaggttttcaaagcggtcagaagcttttgtcctgtgatttttcatca |
35271856 |
T |
|
| Q |
651 |
gatggaaatattctagcaagttgtgg |
676 |
Q |
| |
|
|||||||| ||| | |||||| |||| |
|
|
| T |
35271855 |
gatggaaagattgttgcaagtggtgg |
35271830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 677
Target Start/End: Complemental strand, 35284085 - 35284032
Alignment:
| Q |
624 |
aagctattgtcctgtgatttttcatcggatggaaatattctagcaagttgtggg |
677 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| ||| |||||||| ||||| |
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|
| T |
35284085 |
aagcttttgtcctgcgatttttcatcagatggaaagattgtagcaagtggtggg |
35284032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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