View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20015_low_4 (Length: 428)
Name: NF20015_low_4
Description: NF20015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20015_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 45819099 - 45818700
Alignment:
| Q |
11 |
cagagaagaaaattgagattcaagtattgatggagcttcctcaaacacgttcttatggagctggaggtagttataattttcttgttatattattgtgttt |
110 |
Q |
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| T |
45819099 |
cagagaagaaaattgagattcaagtattgatggagcttcctcaaacacgttcttatggagctggaggtagttataattttcttgttatattattgttttt |
45819000 |
T |
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| Q |
111 |
ttgaaaaaggaaattaataataattaacttgatttgaattaatattgtttggatgaggttttctgaaacttttctgtgcggaaacaggagcagggaggaa |
210 |
Q |
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| T |
45818999 |
ttgaaaaaggaaattaataataattaacttgatttgaattaatattgtttggatgaggttttctgaaacttttctgtgcggaaacaggagcagggaggaa |
45818900 |
T |
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| Q |
211 |
atcgacgcatgattttctgtcgctatacagtaattcaactgccgaacaagatccaaggccatctgctcaaggtactgtataatttgnnnnnnnnnnnnng |
310 |
Q |
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| T |
45818899 |
atcgacgcatgattttctgtcgctatacagtaattcaactgccgaacaagatccaaggccatctgctcaaggtactgtataatttgttttttaatttttg |
45818800 |
T |
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| Q |
311 |
gttattattatgcaaaatgattcggtgtgtgagatttttctttcctatgttgttgccatgnnnnnnnctctgacgtggggatcatggtgcaaacctaaat |
410 |
Q |
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| T |
45818799 |
gttattattatgcaaaatgattcggtgtgtgagatttttctttcctatgttgttgccatgtttttttctgtgacgtggggatcatggtgcaaacctaaat |
45818700 |
T |
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