View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20015_low_5 (Length: 415)
Name: NF20015_low_5
Description: NF20015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20015_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 5 - 399
Target Start/End: Original strand, 43610070 - 43610454
Alignment:
| Q |
5 |
tggacatcatcacaactatcaacaacatgaagatagtgaatcatatgacagaaaatggattttgggttctttactcttgttcctaactaccattacctgg |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43610070 |
tggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacaaaaaatggattttgggttctttactcttgttcctaactaccattacctgg |
43610169 |
T |
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| Q |
105 |
agtttgtggattgtacttcaggtaccataatttaattccatttccatgccttttggataatttccttttgttattatgcacacaagttagttacattgtc |
204 |
Q |
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| T |
43610170 |
agtttgtggattgtacttcaggtagcataatttaattccat------gccttttggataatttccttttgttattatgcacacaagtt----acattgtc |
43610259 |
T |
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| Q |
205 |
tcatttgtttggctcaagactgtaaacactcatactgaaccaaaatgttcaaaataaaaacaggctcagttgcttaaaacttacccttcaaagctaaggt |
304 |
Q |
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| T |
43610260 |
tcatttgtttggctcaagactgtatacactcatactgaaccaaaatgttcaaaataaaaacaggctcagttgcttaaaacttacccttcaaagctaaggt |
43610359 |
T |
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| Q |
305 |
tcatgagcattcaaagcctatcaagtgcaattcagtcatttgtcattgccatagcttttgaaagagatattgagcagtggaagttgggttggaac |
399 |
Q |
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| T |
43610360 |
tcatgagcattcaaagcctatcaagtgcaattcagtcatttgtcattgctatagcttttgaaagagatattgagcagtggaagttgggttggaac |
43610454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 257 - 399
Target Start/End: Original strand, 43617050 - 43617192
Alignment:
| Q |
257 |
aataaaaacaggctcagttgcttaaaacttacccttcaaagctaaggttcatgagcattcaaagcctatcaagtgcaattcagtcatttgtcattgccat |
356 |
Q |
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| T |
43617050 |
aataaaaataggctcagttacttaagagctacccttcaaagctaaagttcataaccattcagagcctatcaagtgcaattcagtcatttgtcattgccat |
43617149 |
T |
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| Q |
357 |
agcttttgaaagagatattgagcagtggaagttgggttggaac |
399 |
Q |
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| T |
43617150 |
agcttttgaaagagatattgagcagtggaagttaggttggaac |
43617192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 255 - 399
Target Start/End: Original strand, 43603912 - 43604056
Alignment:
| Q |
255 |
aaaataaaaacaggctcagttgcttaaaacttacccttcaaagctaaggttcatgagcattcaaagcctatcaagtgcaattcagtcatttgtcattgcc |
354 |
Q |
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| T |
43603912 |
aaaataaaaacaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttatcattgct |
43604011 |
T |
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| Q |
355 |
atagcttttgaaagagatattgagcagtggaagttgggttggaac |
399 |
Q |
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| T |
43604012 |
atagcttttgaaagagattttgagcagtggaagttgggttggaac |
43604056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 43603661 - 43603786
Alignment:
| Q |
5 |
tggacatcatcacaactatcaacaacatgaagatagtgaatcatatgacagaaaatggattttgggttctttactcttgttcctaactaccattacctgg |
104 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||| |||||||||||| | || | | ||| |
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| T |
43603661 |
tggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtgg |
43603760 |
T |
|
| Q |
105 |
agtttgtggattgtacttcaggtacc |
130 |
Q |
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||||||||||||||| |||||||||| |
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| T |
43603761 |
agtttgtggattgtatttcaggtacc |
43603786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 43616695 - 43616832
Alignment:
| Q |
5 |
tggacatcatcacaactatcaacaacatgaagatagtgaatcatatgacagaaaatggattttgggttctttactcttgttcctaactaccattacctgg |
104 |
Q |
| |
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|||| ||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| | ||| |
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| T |
43616695 |
tggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtgg |
43616794 |
T |
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| Q |
105 |
agtttgtggattgtacttcaggtacca-taatttaatt |
141 |
Q |
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| T |
43616795 |
agcttgtggcttgtacttcaggtaccattaatttaatt |
43616832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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