View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20015_low_7 (Length: 300)
Name: NF20015_low_7
Description: NF20015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20015_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 2592391 - 2592692
Alignment:
| Q |
1 |
taattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgttttt---------gtatgttttgatgttgaatgaaagaatgag |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2592391 |
taattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgtatgttttgatgttgaatgaaagaatgag |
2592490 |
T |
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| Q |
92 |
aacttgaaccattttataggcaaagttttgaggttcaatccttggaggtctgaagtggaagagagtttggtattgataacgtttcacttggacttttcta |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2592491 |
aacttgaaccattttataggcaaagttttgaggttcaatccttggaggtctgaagtggaagagagtttggtattgataacgtttcatttggacttttcta |
2592590 |
T |
|
| Q |
192 |
agctagcttgtgtaaaaatggtttcatatcttagtggnnnnnnnnnnnnaataaaatatcttggtggttgtttttatttttaaacaatcttagtgatgat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2592591 |
agctagcttgtgtaaaaatggtttcatatcttagtggttttttttttttaataaaatatcttggtggttgtttttatttttaaacaatcttagtggtgat |
2592690 |
T |
|
| Q |
292 |
gt |
293 |
Q |
| |
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|| |
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| T |
2592691 |
gt |
2592692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2600175 - 2600401
Alignment:
| Q |
1 |
taattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgatgttgaatgaaagaatgagaacttgaac |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
2600175 |
taattagtgcactatgcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgatgttgaatgatagaatgagaacttgacc |
2600274 |
T |
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| Q |
101 |
cattttataggcaaagttt--tgaggttcaatc------cttggaggtctgaagtggaagagagtttggtattgataacgtttcacttggacttttctaa |
192 |
Q |
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| T |
2600275 |
cattttataggcaaagttttgtgaggtttaatcacgggacgtggaggtctgaagtggaagagagattggtattgataacgtttcacttggatatttgta- |
2600373 |
T |
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| Q |
193 |
gctagcttgtgtaaaaatggtttcatatctt |
223 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
2600374 |
---agcttgtgtaaaaatggtttcatgtctt |
2600401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 2578810 - 2578996
Alignment:
| Q |
1 |
taattagtgcactaagcttgttggaagccattcttaagaaatgtgtacacta--attgtttttgtatgttttgatgttgaatgaaagaatga-gaacttg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2578810 |
taattagtgcactaagcttgttggaagccattcttaagaaatgtgtgtactaatattgtttttgtatgttttgatgttgaatgaaagaatgatcaacttg |
2578909 |
T |
|
| Q |
98 |
aaccattttataggcaaa-gttt--tgaggttcaatccttggaggtctgaagtggaagagagtttggtattgataacgtttcacttggacttt |
187 |
Q |
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| |||||||||||||| |||| ||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578910 |
gccgattttataggcaaacgttttgtgaggtt------atggtgaaattgagtggaagagagtttggtattgataacgtttcacttggacttt |
2578996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2608672 - 2608748
Alignment:
| Q |
1 |
taattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgatgttgaat |
80 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||| ||||| |||| || |||||| |||||||||||||||| |
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| T |
2608672 |
taattagggcactaagcttgttggaagccattgttaagaaa--tgtacgctaa-tgcttttgtgtgttttgatgttgaat |
2608748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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