View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20015_low_8 (Length: 272)

Name: NF20015_low_8
Description: NF20015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20015_low_8
NF20015_low_8
[»] chr6 (28 HSPs)
chr6 (18-263)||(4585498-4585743)
chr6 (34-214)||(4570884-4571063)
chr6 (43-242)||(4606941-4607139)
chr6 (26-169)||(4557081-4557224)
chr6 (18-126)||(4579431-4579539)
chr6 (19-153)||(4592206-4592337)
chr6 (18-128)||(4563708-4563818)
chr6 (18-130)||(4560501-4560613)
chr6 (18-130)||(4613743-4613855)
chr6 (18-125)||(4480693-4480800)
chr6 (18-128)||(4574305-4574415)
chr6 (18-130)||(4598166-4598278)
chr6 (18-119)||(4504422-4504523)
chr6 (30-119)||(3171747-3171836)
chr6 (18-109)||(4516337-4516428)
chr6 (18-125)||(4617022-4617129)
chr6 (19-119)||(4392052-4392152)
chr6 (30-125)||(4492955-4493050)
chr6 (30-119)||(4490392-4490481)
chr6 (30-125)||(4505857-4505952)
chr6 (30-119)||(4267203-4267292)
chr6 (36-125)||(4461123-4461212)
chr6 (30-119)||(4469809-4469898)
chr6 (35-106)||(4568072-4568143)
chr6 (18-125)||(4601789-4601896)
chr6 (18-119)||(4625957-4626058)
chr6 (69-119)||(4299816-4299866)
chr6 (17-119)||(4622148-4622250)
[»] chr8 (3 HSPs)
chr8 (41-214)||(16686315-16686486)
chr8 (18-130)||(20863868-20863980)
chr8 (18-125)||(1674226-1674333)
[»] chr5 (2 HSPs)
chr5 (18-125)||(28000124-28000231)
chr5 (30-119)||(24103005-24103094)
[»] scaffold0477 (1 HSPs)
scaffold0477 (18-119)||(4711-4812)
[»] scaffold0288 (1 HSPs)
scaffold0288 (30-119)||(3756-3845)
[»] chr3 (1 HSPs)
chr3 (19-125)||(1281114-1281220)
[»] chr7 (1 HSPs)
chr7 (69-119)||(3086426-3086476)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 4585743 - 4585498
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4585743 caaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgctta 4585644  T
Q  118 aataaaatcaaacctataagtgaattttttatgcaatgtagtattatattgatccattgatattctcctactgaatttaagggatgatgctattgtattg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4585643 aataaaatcaaacctataagtgaattttttatgcaatgtagtattatattgatccattgatattctcctactgaatttaagggatgatgctattgtattg 4585544  T
Q  218 tataacaaatatattgatgctaataaattaagagttcatgatgatg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4585543 tataacaaatatattgatgctaataaattaagagttcatgatgatg 4585498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 4571063 - 4570884
Alignment:
Q  34 tgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaaccta 133  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  4571063 tgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacacc-- 4570966  T
Q  134 taagtga-attttttatgcaatgtagtattatattgatccattgatattctcctactgaatttaagggatgatgctattgta 214  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||    
T  4570965 taagtgacgtttttaatgcaatgtagtattatattgatccattgatcttctgctattgaatttaagggatgaggctattgta 4570884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 4606941 - 4607139
Alignment:
Q  43 aggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaacctataagtga-a 141  Q
    ||||||||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||  |||||||      
T  4606941 aggcggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacc--taagtgact 4607038  T
Q  142 ttttttatgcaatgtagtattatattgatccattgatattctcctactgaatttaagggatgatgctattgtattgtataacaaatatattgatgctaat 241  Q
    |||||||||||||||| |||||| ||||||||||||| || ||||| |||||||||||||||||| || |||| |||||| ||| ||||||||| |||||    
T  4607039 ttttttatgcaatgtattattatgttgatccattgatcttttcctattgaatttaagggatgatgttaatgtagtgtatagcaagtatattgatactaat 4607138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 4557224 - 4557081
Alignment:
Q  26 aattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 125  Q
    ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  4557224 aattgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat 4557125  T
Q  126 caaacctataagtga--attttttatgcaatgtagtattatattga 169  Q
    ||||||  |||||||   ||||||||||||| |||||||| |||||    
T  4557124 caaacc--taagtgacttttttttatgcaatttagtattacattga 4557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 4579539 - 4579431
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || || |    
T  4579539 caaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactca 4579440  T
Q  118 aataaaatc 126  Q
    || ||||||    
T  4579439 aacaaaatc 4579431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 4592337 - 4592206
Alignment:
Q  19 aaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaa 118  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||||||    
T  4592337 aaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaa 4592238  T
Q  119 ataaaatcaaacctataagtgaattttttatgcaa 153  Q
    |||||||||||  | ||||| ||||||||||||||    
T  4592237 ataaaatcaaa--tttaagt-aattttttatgcaa 4592206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 4563818 - 4563708
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||||||||||||||||||||| | ||||||  |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  4563818 caaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgctta 4563719  T
Q  118 aataaaatcaa 128  Q
    || ||||||||    
T  4563718 aacaaaatcaa 4563708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 4560613 - 4560501
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  4560613 caaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgctta 4560514  T
Q  118 aataaaatcaaac 130  Q
    || ||||||||||    
T  4560513 aacaaaatcaaac 4560501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 4613743 - 4613855
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || |||||  |||| |    
T  4613743 caaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctga 4613842  T
Q  118 aataaaatcaaac 130  Q
    || ||||||||||    
T  4613843 aacaaaatcaaac 4613855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 4480800 - 4480693
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  4480800 caaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgctta 4480701  T
Q  118 aataaaat 125  Q
    || |||||    
T  4480700 aacaaaat 4480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 4574415 - 4574305
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    ||||| || |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||||||    
T  4574415 caaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgctta 4574316  T
Q  118 aataaaatcaa 128  Q
    || ||||||||    
T  4574315 aacaaaatcaa 4574305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 4598278 - 4598166
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||| || ||||    
T  4598278 caaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttctta 4598179  T
Q  118 aataaaatcaaac 130  Q
    || | ||||||||    
T  4598178 aacagaatcaaac 4598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 4504422 - 4504523
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||| || |||||||    
T  4504422 caaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgctta 4504521  T
Q  118 aa 119  Q
    ||    
T  4504522 aa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 3171836 - 3171747
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    ||||||||||||||||| |||||||| || |||  ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  3171836 gagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaa 3171747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 4516428 - 4516337
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggt 109  Q
    |||||||| || || |||||||||||||| ||||||||||| ||||| || |||||||||||  ||||||||||||||||||||||||||||    
T  4516428 caaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggt 4516337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 4617129 - 4617022
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||||||||| |||||| |||| ||||| || ||||||||||||||||||||| | ||||| |||||||| || |||||||    
T  4617129 caaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgctta 4617030  T
Q  118 aataaaat 125  Q
    || |||||    
T  4617029 aacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 4392052 - 4392152
Alignment:
Q  19 aaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaa 118  Q
    ||||||| || |||||||||||||||||  ||||||||||  ||||||| |||| ||||| |||||||||||| ||| ||||||||||||| ||||||||    
T  4392052 aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaa 4392151  T
Q  119 a 119  Q
    |    
T  4392152 a 4392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 4493050 - 4492955
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 125  Q
    |||||||| |||||||| |||||||||||   |||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||    
T  4493050 gagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 4490392 - 4490481
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    ||||||||||||||||| | ||||||||||||||  || ||| ||||||||||||||||||| |||||||||||||| ||  ||||||||    
T  4490392 gagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 4505952 - 4505857
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 125  Q
    |||||||| |||| |||  ||||||| || |||||||| |||||||||| |||||||||||| ||||| ||||||||||| ||||||||| |||||    
T  4505952 gagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 4267203 - 4267292
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    |||||||||| |||||| || ||| |||| |||||||| |||| |||||||||||||||||| ||||| |||||||||||  ||||||||    
T  4267203 gagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaa 4267292  T

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Target: chr6; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 4461212 - 4461123
Alignment:
Q  36 aagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 125  Q
    |||||||||| ||||||||| || ||||||||||||  |||||||| ||||||||| ||||| |||||||| || ||||||||| |||||    
T  4461212 aagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaat 4461123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 4469898 - 4469809
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    ||||| |||||||||| ||||||||| || ||||||||||||  |||||||| ||||||||| ||||| |||||||| || |||||||||    
T  4469898 gagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 4568143 - 4568072
Alignment:
Q  35 gaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaagga 106  Q
    |||||||||||| ||| ||||||| |||||||| | || |||||||||||||||||| ||||||||||||||    
T  4568143 gaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

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Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 4601896 - 4601789
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||||| |||  |||||  ||| ||||  || ||||||||||||| |||| |||| ||||| ||||||||||| |||||||    
T  4601896 caaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgctta 4601797  T
Q  118 aataaaat 125  Q
    || |||||    
T  4601796 aacaaaat 4601789  T

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Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 4626058 - 4625957
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||||||||| |||||| |||  || || || |||||||||||||||||  |||| ||| ||||||| || || |||||||    
T  4626058 caaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgctta 4625959  T
Q  118 aa 119  Q
    ||    
T  4625958 aa 4625957  T

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Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 4299816 - 4299866
Alignment:
Q  69 ggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    |||||||| |||||||||||||| ||||| |||||||||||| ||||||||    
T  4299816 ggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaa 4299866  T

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Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 4622250 - 4622148
Alignment:
Q  17 acaaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctt 116  Q
    ||||||||| || ||||||||| ||||||| || |||   || || ||||| |||||||||||||  |||||||| ||||| |||||||||||  |||||    
T  4622250 acaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgctt 4622151  T
Q  117 aaa 119  Q
    |||    
T  4622150 aaa 4622148  T

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Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 16686315 - 16686486
Alignment:
Q  41 gaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaacctataagtga 140  Q
    ||||| ||| || ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  |||||||    
T  16686315 gaaggtggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacc--taagtga 16686412  T
Q  141 -attttttatgcaatgtagtattatattgatccattgatattctcctactgaatttaagggatgatgctattgta 214  Q
      |||||||||||||| |||| ||||||||||||||||| |||||| | |||||| ||||||| |||||||||||    
T  16686413 ctttttttatgcaatgcagtagtatattgatccattgatcttctccaattgaattcaagggat-atgctattgta 16686486  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 20863868 - 20863980
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| | |||| ||||||| ||||||||||| ||||||||||||||||| |||||||    
T  20863868 caaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgctta 20863967  T
Q  118 aataaaatcaaac 130  Q
    || ||||||||||    
T  20863968 aacaaaatcaaac 20863980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 1674333 - 1674226
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || || |||||||||||||| |||||| |||| ||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||    
T  1674333 caaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgctta 1674234  T
Q  118 aataaaat 125  Q
    || |||||    
T  1674233 aacaaaat 1674226  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 28000124 - 28000231
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||| ||||| |||||| |||| ||||| || ||||||||||||||||||||||| |||||||||||||| || ||| |||    
T  28000124 caaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgttta 28000223  T
Q  118 aataaaat 125  Q
    || |||||    
T  28000224 aacaaaat 28000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 24103094 - 24103005
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    ||||| ||||||||||| || ||| |||| ||| |||| |||| |||||||||||||||||| ||||| |||||||||||  ||||||||    
T  24103094 gagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaa 24103005  T

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Target: scaffold0477 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 4711 - 4812
Alignment:
Q  18 caaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgctta 117  Q
    |||||||| || ||||||||||||||||| |||||| |||| ||  |||| || |||||||||||||||||||| |||||||||||||||||  ||||||    
T  4711 caaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgctta 4810  T
Q  118 aa 119  Q
    ||    
T  4811 aa 4812  T

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Target: scaffold0288 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 3756 - 3845
Alignment:
Q  30 gagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    ||||| ||||||||||| |||||| |||| ||||| || ||| |||||||||||||| |||| ||||| |||||||||||||||||||||    
T  3756 gagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 3845  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 1281220 - 1281114
Alignment:
Q  19 aaaaggcaattgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaa 118  Q
    ||||||| || || |||||||||  |||||||||| |||| ||||| || |||||||||||||||||||| || ||||||||||||||  | ||||||||    
T  1281220 aaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaa 1281121  T
Q  119 ataaaat 125  Q
    | |||||    
T  1281120 acaaaat 1281114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 3086476 - 3086426
Alignment:
Q  69 ggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 119  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  3086476 ggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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