View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_11 (Length: 430)
Name: NF20016_high_11
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 42471613 - 42471204
Alignment:
| Q |
18 |
catttgggtctgtatgccctggcaatccataagtaagttctggttgtgggcatggtggatagtaattcactgccatgtgctgcccttgttcacctaaagc |
117 |
Q |
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| T |
42471613 |
catttgggtctgtatgccctggcaatccataagtaagttctggttgtgggcatggtggatagtaattcactgccatgtgctgcccttgttcacctaaagc |
42471514 |
T |
|
| Q |
118 |
attccttaagtaatctttttctaggcccaagctctctgatatgtattcttctattctcaaccccaattccctaacttctttgcagtaatttgccacagtt |
217 |
Q |
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| T |
42471513 |
attccttaagtaatctttttctaggcccaagctctctgatatgtattcttctattctcaaccccaattccctaacttctttgcagtaatttgccacagtt |
42471414 |
T |
|
| Q |
218 |
tccctgccacatacaaattatcatgcaacagttgtcaattatgttggaccttaatttgcttgttaattcatcatctaccgaaacacaaattattgatggg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471413 |
tccctgccacatacaaattatcatgcaacagttgtcaattatgttggactttaatttgcttgttaattcatcatctaccgaaacacaaattattgatggg |
42471314 |
T |
|
| Q |
318 |
ggcttgtttatcatttgtcatgaagagccttgtcgtagctgggcttaatcaaggagactgatgagtatatgaatttttatcttcctta-ttttgtttata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42471313 |
ggcttgtttatcatttgtcatgaagagccttgtcgtagctgggcttaatcaaggagactgatgagtatatgaatttttatcttccttatttttgtttatt |
42471214 |
T |
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| Q |
417 |
ttcttcgaca |
426 |
Q |
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| T |
42471213 |
ttctacgaca |
42471204 |
T |
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