View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_high_14 (Length: 411)
Name: NF20016_high_14
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 14731174 - 14731568
Alignment:
| Q |
1 |
ataagattaaataagtagcagaaagtcattgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14731174 |
ataagattaaataagtagcagaaagtcattgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacct |
14731273 |
T |
|
| Q |
101 |
gtcctccaaggagatcttcaatgcttcaagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14731274 |
gtcctccaaggagatcttcaatgcttcaagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgatt |
14731373 |
T |
|
| Q |
201 |
aagaaagagaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14731374 |
aagaaagagaaataacaataaggagaggatgaaatcattcagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccaga |
14731473 |
T |
|
| Q |
301 |
atttgcatcctgaaaacaacagtgaaagttagatcaaggcattcaatgtgttccacgtaagaataaaacagccaataaaaattagtggaagtgtt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14731474 |
atttgcatcctgaaaacaacagtgaaagttagatcaaggcattcaatgtgttccacgtaagaatgaaacagccaataaaaattagtggaagtgtt |
14731568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 1096089 - 1095978
Alignment:
| Q |
208 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgca |
307 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||| | || |||||||| ||||||||||| |
|
|
| T |
1096089 |
agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaagcagagcatgtccattcttacctgtaacagggagcacctcagaatttgca |
1095990 |
T |
|
| Q |
308 |
tcctgaaaacaa |
319 |
Q |
| |
|
|||||| |||| |
|
|
| T |
1095989 |
gcctgaatacaa |
1095978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 46 - 268
Target Start/End: Original strand, 17592807 - 17593035
Alignment:
| Q |
46 |
cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaa------tgcttcaagtttttcaaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17592807 |
cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaaccttgatgcttcaagtttttcaaa |
17592906 |
T |
|
| Q |
140 |
gtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgattaagaaagagaaataacaataaggagaggatgaaatcatt |
239 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17592907 |
gtgcctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcacttaagaaagagaaatagcaataaggagaggatgaaatcatt |
17593006 |
T |
|
| Q |
240 |
gagaaaacaataaatcagtcagagcatgt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17593007 |
gagaaaacaataaatcagtcagagcatgt |
17593035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 208 - 374
Target Start/End: Original strand, 9891194 - 9891360
Alignment:
| Q |
208 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgca |
307 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| | |||||| |||||| ||| |
|
|
| T |
9891194 |
agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaatcagagcatgtccattcttacctgcagcaggaagcacctaagaattcgca |
9891293 |
T |
|
| Q |
308 |
tcctgaaaacaacagtgaaagttagatcaaggcattcaatgtgttccacgtaagaataaaacagcca |
374 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| | ||||||||| ||| ||| ||||||||| |
|
|
| T |
9891294 |
gcctgaaaacaatgacgaaaattagacaaaggcattctaggtgttccacctaacaatgaaacagcca |
9891360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 31236751 - 31236863
Alignment:
| Q |
208 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgca |
307 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||| ||||||| ||| |
|
|
| T |
31236751 |
agaactaacaataaggagaggatgtaatcatcgagaaaacaatttatcactcagagcatgtccattcttacctgcagcagggagcacctcagaattcgca |
31236850 |
T |
|
| Q |
308 |
tcctgaaaacaac |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31236851 |
gcctgaaaacaac |
31236863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 216 - 374
Target Start/End: Original strand, 31253407 - 31253564
Alignment:
| Q |
216 |
caataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaaa |
315 |
Q |
| |
|
||||||||| |||||||| || || ||||| ||||| ||||||| ||||||| |||| |||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
31253407 |
caataaggaaaggatgaagacagtgtgaaaataataa-tcagtcaaagcatgttcattcttacctgcagcagggagcacctcagaatttgcagcctgaaa |
31253505 |
T |
|
| Q |
316 |
acaacagtgaaagttagatcaaggcattcaatgtgttccacgtaagaataaaacagcca |
374 |
Q |
| |
|
||||| |||| ||||| ||||||||| | ||||||||| ||| ||| ||||||||| |
|
|
| T |
31253506 |
acaacgacgaaaattagacaaaggcattccaggtgttccacctaacaatgaaacagcca |
31253564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 31236536 - 31236712
Alignment:
| Q |
51 |
tacagtctacaccactgagacagatagcaaaaat--tgtcatttcacaacctgtcctccaaggagatcttca------atgcttcaagtttttcaaagtg |
142 |
Q |
| |
|
|||| |||||||||||||||||||||||| || | |||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
31236536 |
tacactctacaccactgagacagatagcacaacttctgtcctttcacaacttgtcctccaacgagatcttcatccttgatgcttcaagtttttcaaagtg |
31236635 |
T |
|
| Q |
143 |
tctctgagattaagaagttgtattttt--catgttttagaattcacaaaactc---atcgattaagaaagagaaata |
214 |
Q |
| |
|
||||||||||| || ||| |||| | ||||||||||||| ||||| | || |||||||||||||| |||||| |
|
|
| T |
31236636 |
actctgagattagaaaattgaatttatcacatgttttagaatccacaacattccatatcgattaagaaagggaaata |
31236712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 16133645 - 16133542
Alignment:
| Q |
215 |
acaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaa |
314 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||| ||||| | |||| |||||||||| || || ||| |
|
|
| T |
16133645 |
acaatatggagaggatgaagtcattgagaaaacaattgatcagtcagagcatgttcattcttacctacagcaggaagcagcccagaatttacagccagaa |
16133546 |
T |
|
| Q |
315 |
aaca |
318 |
Q |
| |
|
|||| |
|
|
| T |
16133545 |
aaca |
16133542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 16133875 - 16133841
Alignment:
| Q |
4 |
agattaaataagtagcagaaagtcattgaagacaa |
38 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16133875 |
agattaaataagtagcagaaaatcattgaagacaa |
16133841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 442641 - 442557
Alignment:
| Q |
235 |
tcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaaaacaa |
319 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||| |||||||||| | |||||||| ||||||||||| ||||||||||| |
|
|
| T |
442641 |
tcattgagaaaacaatttatcaataagagcatgtccattcttacctgcagaagggagcacctcagaatttgcagcctgaaaacaa |
442557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University