View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_high_17 (Length: 399)

Name: NF20016_high_17
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_high_17
NF20016_high_17
[»] chr3 (15 HSPs)
chr3 (12-347)||(48202066-48202401)
chr3 (216-290)||(8383241-8383315)
chr3 (216-285)||(8039836-8039905)
chr3 (222-290)||(37077342-37077410)
chr3 (230-283)||(4990982-4991035)
chr3 (210-267)||(20691326-20691383)
chr3 (221-286)||(32804546-32804611)
chr3 (222-267)||(52369782-52369827)
chr3 (226-266)||(9624649-9624689)
chr3 (226-290)||(11493372-11493436)
chr3 (222-290)||(24205048-24205116)
chr3 (216-288)||(26290357-26290429)
chr3 (222-266)||(34307787-34307831)
chr3 (216-256)||(35222956-35222996)
chr3 (222-282)||(41319317-41319377)
[»] chr5 (15 HSPs)
chr5 (216-287)||(32630736-32630807)
chr5 (216-287)||(28588675-28588746)
chr5 (217-290)||(19737484-19737557)
chr5 (230-290)||(6326312-6326372)
chr5 (222-290)||(9449453-9449521)
chr5 (208-267)||(17925165-17925224)
chr5 (217-288)||(23012410-23012480)
chr5 (216-290)||(8420011-8420085)
chr5 (224-266)||(18592081-18592123)
chr5 (218-288)||(27144449-27144519)
chr5 (216-266)||(36838551-36838601)
chr5 (216-289)||(3966488-3966561)
chr5 (222-282)||(35252321-35252379)
chr5 (223-267)||(38749571-38749615)
chr5 (216-260)||(41558655-41558699)
[»] chr6 (20 HSPs)
chr6 (216-283)||(19040343-19040410)
chr6 (211-290)||(20371106-20371185)
chr6 (216-290)||(9629367-9629441)
chr6 (216-289)||(5732511-5732584)
chr6 (216-290)||(7265594-7265668)
chr6 (216-266)||(9617442-9617492)
chr6 (216-260)||(7377993-7378037)
chr6 (227-283)||(15443686-15443742)
chr6 (222-266)||(30866151-30866195)
chr6 (215-266)||(20370480-20370531)
chr6 (216-266)||(9025495-9025545)
chr6 (216-290)||(9027162-9027236)
chr6 (216-266)||(10294115-10294165)
chr6 (217-290)||(9658863-9658936)
chr6 (167-260)||(13360326-13360417)
chr6 (223-267)||(7569176-7569220)
chr6 (216-260)||(9024177-9024221)
chr6 (200-256)||(12627801-12627857)
chr6 (222-290)||(13851720-13851788)
chr6 (223-283)||(32313395-32313455)
[»] chr2 (11 HSPs)
chr2 (200-283)||(896202-896285)
chr2 (216-266)||(42832277-42832327)
chr2 (210-267)||(18570979-18571036)
chr2 (223-282)||(21616754-21616813)
chr2 (197-267)||(37497127-37497197)
chr2 (217-267)||(44605141-44605191)
chr2 (223-268)||(19613621-19613666)
chr2 (224-260)||(15909641-15909677)
chr2 (222-290)||(23718010-23718078)
chr2 (222-290)||(24105682-24105750)
chr2 (222-266)||(30471046-30471090)
[»] chr7 (23 HSPs)
chr7 (215-288)||(5835233-5835306)
chr7 (222-288)||(3520349-3520415)
chr7 (210-288)||(22868028-22868106)
chr7 (216-290)||(27945025-27945099)
chr7 (216-289)||(32308105-32308178)
chr7 (223-268)||(36314635-36314680)
chr7 (210-290)||(23191880-23191960)
chr7 (216-267)||(4909158-4909209)
chr7 (188-283)||(20549782-20549876)
chr7 (216-290)||(1433438-1433512)
chr7 (216-290)||(9482918-9482992)
chr7 (216-266)||(19992009-19992059)
chr7 (222-288)||(26329389-26329455)
chr7 (222-259)||(10547176-10547213)
chr7 (216-265)||(12843176-12843225)
chr7 (217-266)||(17851439-17851488)
chr7 (216-281)||(19206043-19206108)
chr7 (215-288)||(22484011-22484084)
chr7 (229-290)||(29787383-29787444)
chr7 (222-267)||(38134413-38134458)
chr7 (216-260)||(22602711-22602755)
chr7 (222-266)||(27732246-27732290)
chr7 (222-290)||(43249977-43250045)
[»] chr1 (14 HSPs)
chr1 (216-288)||(7918212-7918284)
chr1 (223-290)||(6427334-6427401)
chr1 (222-279)||(32724105-32724162)
chr1 (210-290)||(23636044-23636124)
chr1 (216-288)||(36878447-36878519)
chr1 (217-259)||(10233268-10233310)
chr1 (216-266)||(38503328-38503378)
chr1 (217-266)||(1864882-1864931)
chr1 (222-267)||(40747780-40747825)
chr1 (222-290)||(398772-398840)
chr1 (210-290)||(2896116-2896196)
chr1 (223-267)||(17425101-17425145)
chr1 (216-260)||(25361900-25361944)
chr1 (216-260)||(44482244-44482288)
[»] chr8 (14 HSPs)
chr8 (216-266)||(25172699-25172749)
chr8 (216-288)||(4786339-4786411)
chr8 (210-266)||(14134707-14134763)
chr8 (222-266)||(31236584-31236628)
chr8 (217-288)||(7658449-7658520)
chr8 (215-266)||(12606829-12606880)
chr8 (225-267)||(34201056-34201098)
chr8 (215-288)||(20679395-20679468)
chr8 (223-267)||(3508059-3508103)
chr8 (222-266)||(8798838-8798882)
chr8 (216-290)||(9382956-9383028)
chr8 (218-266)||(20785468-20785516)
chr8 (222-282)||(24362209-24362269)
chr8 (222-266)||(34897093-34897137)
[»] chr4 (12 HSPs)
chr4 (222-276)||(11135301-11135355)
chr4 (216-288)||(35723385-35723458)
chr4 (222-283)||(40613441-40613502)
chr4 (222-282)||(24343499-24343559)
chr4 (206-266)||(33950144-33950204)
chr4 (223-290)||(36635308-36635375)
chr4 (217-267)||(18513243-18513293)
chr4 (194-300)||(40179616-40179721)
chr4 (222-267)||(19230316-19230361)
chr4 (222-267)||(43300623-43300668)
chr4 (216-260)||(30982879-30982923)
chr4 (227-267)||(43299983-43300023)
[»] scaffold0018 (1 HSPs)
scaffold0018 (218-290)||(192252-192324)
[»] scaffold0007 (1 HSPs)
scaffold0007 (222-290)||(225275-225343)
[»] scaffold0004 (1 HSPs)
scaffold0004 (230-290)||(92791-92851)
[»] scaffold0376 (1 HSPs)
scaffold0376 (216-266)||(6320-6370)
[»] scaffold0294 (1 HSPs)
scaffold0294 (193-291)||(16006-16103)
[»] scaffold0110 (1 HSPs)
scaffold0110 (217-281)||(28843-28907)
[»] scaffold0022 (1 HSPs)
scaffold0022 (223-267)||(99900-99944)
[»] scaffold0011 (1 HSPs)
scaffold0011 (215-267)||(240021-240073)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 48202066 - 48202401
Alignment:
Q  12 agcagagaataaatcaacaattatttcactaccaaggcagagaattaaattctctgcatgcaccataaaatactaccaaatctactttcttattttgtcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48202066 agcagagaataaatcaacaattatttcactaccaaggcagagaattaaattctctgcatgcaccataaaatactaccaaatctactttcttattttgtcc 48202165  T
Q  112 aacatgcagaaaaattgtgacctactatctgttcatggtgacaaaataatcgagcacactcttcagattaggtggatctcaatgtcgaacatgtgttggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48202166 aacatgcagaaaaattgtgacctactatctgttcatggtgacaaaataatcaagcacactcttcagattaggtggatctcaatgtcgaacatgtgttggt 48202265  T
Q  212 gtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccgcatcatgttcaaatccatgtt 311  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48202266 gtttgacacagacacatataattacattaaattatgtgattttctcaaactattatggatgtcggcgtgtcaatgtccgcattatgttcaaatccatgtt 48202365  T
Q  312 tgtatccgtgcttcatacgcactaactaacaaacac 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48202366 tgtatccgtgcttcatatgcactaactaacaaacac 48202401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 8383315 - 8383241
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||| |||||||||| |||| ||| | ||||||||||| |||||  | ||||||||||||||||||||    
T  8383315 gacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccg 8383241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 8039836 - 8039905
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaat 285  Q
    ||||| |||||||||||||||| |||| ||| ||||||||||||| |||||  | ||| |||||||||||    
T  8039836 gacaccgacacatataattacactgaattatataattttctcaaattattagcggtgttggcgtgtcaat 8039905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 37077410 - 37077342
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||||||| ||| ||||||| ||||| || |||||||| |||||| | ||||||||||||| ||||||    
T  37077410 gacacatatgattccattgaattatgttatattctcaaattattatcggtgtcggcgtgtcactgtccg 37077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 4990982 - 4991035
Alignment:
Q  230 taattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    |||||||| |||| |||||||||||||||||||||||  | |||||| ||||||    
T  4990982 taattacactgaattatgtaattttctcaaactattagcggtgtcggagtgtca 4991035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 20691383 - 20691326
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||| |||||| ||||||||| |||||| |||| ||||| ||||||||||| ||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattat 20691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 32804546 - 32804611
Alignment:
Q  221 agacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatg 286  Q
    ||||||||||||||||| | || ||||| ||||||||||| |||||  | ||||||| ||||||||    
T  32804546 agacacatataattacactaaattatgtgattttctcaaattattaacggtgtcggcatgtcaatg 32804611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 52369827 - 52369782
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||| ||| ||||||||||| ||||||||||||||||| ||||||    
T  52369827 gacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 9624689 - 9624649
Alignment:
Q  226 catataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  9624689 catataattacattgaattatgtgattttctcaaattatta 9624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 11493372 - 11493436
Alignment:
Q  226 catataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||||||| |||| ||||| ||||||||| | |||||  | ||||| ||||||||||||||    
T  11493372 catataattacactgaattatgtgattttctcacattattagtggtgtcgacgtgtcaatgtccg 11493436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 24205048 - 24205116
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| |||||||||| || | ||||| ||||||||||| ||||||   ||||||||||||| ||||||    
T  24205048 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccg 24205116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 26290429 - 26290357
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    ||||| |||||||||||||| |  ||| ||||| ||||||||||| |||||  | ||||||||||||| ||||    
T  26290429 gacactgacacatataattaaaccgaactatgtgattttctcaaattattaatggtgtcggcgtgtcagtgtc 26290357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 34307787 - 34307831
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| |||||||||| |||||||||| ||||||||||| |||||    
T  34307787 gacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 35222996 - 35222956
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttct 256  Q
    ||||| ||||||||||||||||||||| ||||| |||||||    
T  35222996 gacaccgacacatataattacattgaattatgtgattttct 35222956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 41319317 - 41319377
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtc 282  Q
    |||||||| |||||||||||| ||||| ||||| ||||| |||||| | ||||| ||||||    
T  41319317 gacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtc 41319377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 32630736 - 32630807
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgt 287  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||| |||||| | |||| ||||||||||||    
T  32630736 gacactgacacatataattacattgaattatataattttctcaaattattatcggtgtcagcgtgtcaatgt 32630807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 28588675 - 28588746
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgt 287  Q
    ||||| ||||| |||||||||| |||| ||||| ||||||||||| |||||  | |||||||||||||||||    
T  28588675 gacaccgacacctataattacactgaattatgtgattttctcaaattattaccggtgtcggcgtgtcaatgt 28588746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 19737484 - 19737557
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||| ||||||||| ||| ||||||| ||||||||||||||||| |||||| | | || |||||||| ||||||    
T  19737484 acaccgacacatatgattgcattgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtccg 19737557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 6326312 - 6326372
Alignment:
Q  230 taattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||| |||| ||||||||||||||||| || ||  ||||||||||||||| ||||||    
T  6326312 taattacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtccg 6326372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 9449521 - 9449453
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||| ||| |||||||||| ||||| ||||||||||| |||||| | |||||||||| || ||||||    
T  9449521 gacacaaatagttacattgaattatgtgattttctcaaattattattggtgtcggcgtgccagtgtccg 9449453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 17925165 - 17925224
Alignment:
Q  208 tggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||||| ||||| ||||||||| ||||||||||| ||||| ||||||| ||| ||||||    
T  17925165 tggtgttcgacaccgacacatattattacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 23012410 - 23012480
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||| |||||||||||||||||| || ||| | ||||||||||| ||||| | ||||||| |||||||||||    
T  23012410 acaccgacacatataattacattaaattatatgattttctcaaattatta-gcatgtcggtgtgtcaatgtc 23012480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 8420085 - 8420011
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||| | ||||||||||||| ||||| ||||| ||||| |||||   |||||||||||||| ||||||    
T  8420085 gacaccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtcggcgtgtcattgtccg 8420011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 18592123 - 18592081
Alignment:
Q  224 cacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||    
T  18592123 cacatataattacattgaattatgtaattttcttaaaatatta 18592081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 27144519 - 27144449
Alignment:
Q  218 cacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||||||||||||||||||| | || ||||| |||| |||||| |||||  | ||||||||||||| ||||    
T  27144519 cacagacacatataattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtc 27144449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 36838601 - 36838551
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| |||||||||||||||| | || ||||||||||||||||| |||||    
T  36838601 gacaccgacacatataattacactaaattatgtaattttctcaaattatta 36838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 3966561 - 3966488
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtcc 289  Q
    ||||| |||||||||||||||| |||| | ||| ||||||||||| |||||  | ||||||| ||||| |||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtcc 3966488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 35252321 - 35252379
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtc 282  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||| | ||||||||||||    
T  35252321 gacacatatgattacatt-aactatgtaattttctcaaa-tattattggtgtcggcgtgtc 35252379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||||||||||||||||||| ||||| ||||| ||||| ||||||    
T  38749571 acacatataattacattgaattatgtcattttttcaaattattat 38749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 41558655 - 41558699
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  41558655 gacactgacacatttaattacattgaattatgtcattttctcaaa 41558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 19040410 - 19040343
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||| |||||  | |||||||||||||    
T  19040410 gacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtca 19040343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 20371106 - 20371185
Alignment:
Q  211 tgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||| ||||| |||||||||||| |||||||  ||||| ||||||||||| |||||  | ||||||||||||||||||||    
T  20371106 tgttcgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcggcgtgtcaatgtccg 20371185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 9629441 - 9629367
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||   | ||||||||||||||| ||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattattggcggtgtcggcgtgtcaatatccg 9629367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 5732511 - 5732584
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtcc 289  Q
    ||||| |||||||||||||||| | |||||||| ||||||||||| |||||  | ||||||||||||| |||||    
T  5732511 gacaccgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtcc 5732584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 7265594 - 7265668
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| |||||||||||||||| |||| ||||| ||||||||||| |||||  | ||| ||||||||| ||||||    
T  7265594 gacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 9617492 - 9617442
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 7378037 - 7377993
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||    
T  7378037 gacaccgacacatataattacattgaattatgtgattttctcaaa 7377993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 15443742 - 15443686
Alignment:
Q  227 atataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    ||||||||| |||||| ||||| ||||||||||| |||||| ||||||| |||||||    
T  15443742 atataattatattgaattatgttattttctcaaattattattgatgtcgacgtgtca 15443686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 30866151 - 30866195
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  30866151 gacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 20370480 - 20370531
Alignment:
Q  215 tgacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||| ||||| ||||  ||||||||||||||||||||||||||| |||||    
T  20370480 tgacactgacacttatacctacattgaaatatgtaattttctcaaattatta 20370531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 9025495 - 9025545
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| |||||||||||||||| |||| ||||| ||||||||||| |||||    
T  9025495 gacaccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 9027236 - 9027162
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||||||||||||||  ||| ||||| ||| ||||||| |||||  | ||||||||||||| ||||||    
T  9027236 gacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccg 9027162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 10294165 - 10294115
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| ||||||||||||||||||||||||||  ||| ||||||| |||||    
T  10294165 gacaccgacacatataattacattgaaatatgcgattatctcaaattatta 10294115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 9658936 - 9658863
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||| |||| ||||||||||| |||| ||||| ||||||| ||| |||||  | ||||||||||||| ||||||    
T  9658936 acaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccg 9658863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 13360326 - 13360417
Alignment:
Q  167 acactcttcagattaggtggatctcaatgtcgaacatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||||||| ||||||| |  ||||| ||||| |||| ||||| ||| |||||| || ||||||||||||| |||| ||||| |||||||||||    
T  13360326 acactcttcggattaggcgtgtctcagtgtcggacat-tgttg-tgtctgacaccgaaacatataattacactgaattatgtgattttctcaaa 13360417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 7569176 - 7569220
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||| |||||||||| |||| ||||||||||||||||| ||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattat 7569220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 9024177 - 9024221
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| ||||||||| ||||||||||| ||||| |||||||||||    
T  9024177 gacactgacacatatgattacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 12627801 - 12627857
Alignment:
Q  200 acatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttct 256  Q
    ||||||||||||||  ||||  |||| |||| ||||||||||||||||| |||||||    
T  12627801 acatgtgttggtgtcagacatcgacatatatgattacattgaaatatgttattttct 12627857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 13851788 - 13851720
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||||||||||| |||| || || ||||||||||| |||||  | ||||| ||||||| ||||||    
T  13851788 gacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccg 13851720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 32313455 - 32313395
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    |||||||||||| |||||||  |||| ||||||||||  |||||| | |||||||||||||    
T  32313455 acacatataattgcattgaatcatgttattttctcaacttattattggtgtcggcgtgtca 32313395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 896285 - 896202
Alignment:
Q  200 acatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    ||||| ||||||||  ||| | ||||||||| ||||||||||||||||| |||||||||||||||||    |||||||||||||    
T  896285 acatgcgttggtgtccgacgccgacacatatgattacattgaaatatgtgattttctcaaactattagcagtgtcggcgtgtca 896202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 42832277 - 42832327
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||| |||||    
T  42832277 gacaccgacacttataattacactgaaatatgtaattttctcaaattatta 42832327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 18571036 - 18570979
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||| ||||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  18571036 gtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattat 18570979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 21616813 - 21616754
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtc 282  Q
    ||||||||||||||| |||| ||||| ||||||||||| |||||  | ||||||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 21616754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 37497197 - 37497127
Alignment:
Q  197 cgaacatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||||||||| ||||| |||||| |||| |||| ||||||||||| | ||  ||||||||||| ||||||    
T  37497197 cgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 37497127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 44605141 - 44605191
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||| ||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 19613621 - 19613666
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattatg 268  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattattatg 19613666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 15909641 - 15909677
Alignment:
Q  224 cacatataattacattgaaatatgtaattttctcaaa 260  Q
    |||||||||||||| |||| |||||||||||||||||    
T  15909641 cacatataattacactgaattatgtaattttctcaaa 15909677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 23718078 - 23718010
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||||||||||| |||| ||||| | ||||||||| |||||  | |||||| |||||| ||||||    
T  23718078 gacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccg 23718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 24105750 - 24105682
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||||||||||| |||| ||||| | ||||||||| |||||  | |||||| |||||| ||||||    
T  24105750 gacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccg 24105682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 30471090 - 30471046
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||||||||| ||| ||||| ||||||||||| |||||    
T  30471090 gacacatataattacatcgaattatgtgattttctcaaaatatta 30471046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 5835306 - 5835233
Alignment:
Q  215 tgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||||| |||||||||||||||| |||| ||||| |||||||||||||||||  | ||||||||| ||| ||||    
T  5835306 tgacaccgacacatataattacactgaattatgttattttctcaaactattagtggtgtcggcgtatcagtgtc 5835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 3520349 - 3520415
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    ||||||||||||||||||||| ||| | |||||||||||  ||||| | |||| |||||||||||||    
T  3520349 gacacatataattacattgaattatatgattttctcaaatgattatcggtgtcagcgtgtcaatgtc 3520415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 22868106 - 22868028
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||||||| || |||||||||||||||| |||| ||||| ||||||||| | |||||  | ||||||||||||| ||||    
T  22868106 gtgtttgatactgacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 27945099 - 27945025
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||| | |||||||| |||| ||||||||||||||||| |||||  | ||||||||||||| ||||||    
T  27945099 gacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccg 27945025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 32308178 - 32308105
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtcc 289  Q
    ||||| |||||||| ||||||| |||| ||||| ||||||||||| |||||  | ||||||||||||| |||||    
T  32308178 gacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 32308105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 36314635 - 36314680
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattatg 268  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||    
T  36314635 acacatatgattacattgaaatatgtcattttctcaaattattatg 36314680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 23191960 - 23191880
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||| |||||| || |||| |||||||| |||||||||| ||||||||||| |||||  | ||||||||| ||| ||||||    
T  23191960 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtgtcggcgtatcagtgtccg 23191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 4909209 - 4909158
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||| ||||||||| |||||| |||| ||||||||||||||||| ||||||    
T  4909209 gacactgacacatatgattacaatgaattatgtaattttctcaaattattat 4909158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 20549876 - 20549782
Alignment:
Q  188 tctcaatgtcgaacatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    ||||| ||||| |||||||||| |||  ||||| |||||||||||||||| |||| || || ||||||||||| |||||  | |||||| ||||||    
T  20549876 tctcattgtcggacatgtgttg-tgtccgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtca 20549782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 1433512 - 1433438
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||||||||||||||   ||  |||| ||||||||||| |||||  | ||||||||||||||||||||    
T  1433512 gacaccgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccg 1433438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 9482992 - 9482918
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| |||||||||||||||| |||| | ||| ||||||||||| ||| |  |||||||| |||||| ||||||    
T  9482992 gacaccgacacatataattacactgaattgtgtgattttctcaaattatcagcgatgtcggtgtgtcagtgtccg 9482918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 19992059 - 19992009
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| ||||| |||||||||| |||||||||| ||||||||||| |||||    
T  19992059 gacaccgacacttataattacactgaaatatgtgattttctcaaattatta 19992009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 26329389 - 26329455
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||||||||||||||| |||| | |||  |||||||||| |||||  ||||||||||||||| ||||    
T  26329389 gacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtc 26329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 10547176 - 10547213
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaa 259  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  10547176 gacacatgtaattacattgaattatgtaattttctcaa 10547213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 12843176 - 12843225
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatt 265  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||||| ||||    
T  12843176 gacactgacacatgtaattacattgaattatgtaattttatcaaattatt 12843225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 17851488 - 17851439
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||||||||||||| |||| ||||| ||||||| ||| |||||    
T  17851488 acacagacacatataattacactgaattatgtgattttctaaaattatta 17851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 19206108 - 19206043
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgt 281  Q
    ||||| |||||||||||||| | |||| ||||| ||||||||||| |||||  | |||||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgt 19206043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 22484084 - 22484011
Alignment:
Q  215 tgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||||| |||||||||||||| | |||| |||| |||||||| ||| |||||  | ||||||||||||| ||||    
T  22484084 tgacaccgacacatataattatactgaattatgcaattttctaaaattattagcggtgtcggcgtgtcagtgtc 22484011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 29787383 - 29787444
Alignment:
Q  229 ataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||||||| |||| ||||| ||||||||||| |||||  | ||||||||||| ||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgttaatgtccg 29787444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 38134413 - 38134458
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattat 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 22602711 - 22602755
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| |||||||||||||||| |||| ||||| |||||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttctcaaa 22602755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 27732246 - 27732290
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||||||||||||| |||| ||||||||||||| ||| |||||    
T  27732246 gacacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 43250045 - 43249977
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| |||||||||| || | ||||| ||||||||||| ||||||   ||||||||||||| ||||||    
T  43250045 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccg 43249977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 7918212 - 7918284
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    ||||| |||||||||||||||| |||| ||||| ||||||||||| |||||  |||||| |||||||| ||||    
T  7918212 gacactgacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtc 7918284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 6427401 - 6427334
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||  | ||| ||||||||| ||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccg 6427334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 32724105 - 32724162
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgt 279  Q
    |||||||||||||||||| || ||||||| ||||||||| |||||  |||||||||||    
T  32724105 gacacatataattacattaaattatgtaaatttctcaaattattaacgatgtcggcgt 32724162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 23636044 - 23636124
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||| |||||| |||||||| ||||||| |||| ||||||||||||||||| | ||   | | ||||||||||||||||||    
T  23636044 gtgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatttttggcggtttcggcgtgtcaatgtccg 23636124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 36878519 - 36878447
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    ||||| ||||| |||||||||| |||| ||||| ||||||||||| |||||  | ||||||||||||| ||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 10233310 - 10233268
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaa 259  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||    
T  10233310 acacagacacatataattacactgaattatgtgattttctcaa 10233268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 38503378 - 38503328
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| |||||||||||||||| |||||||| | ||||||||||| |||||    
T  38503378 gacaccgacacatataattacactgaaatatatgattttctcaaattatta 38503328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 1864882 - 1864931
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||| |||||||||||||||| |||| ||||| ||||||||||| |||||    
T  1864882 acaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 40747780 - 40747825
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||| ||||||||||||||| ||||| ||||||||||| ||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattat 40747825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 398772 - 398840
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| |||||||||| |||| ||||| ||||| ||||| |||||  | ||||||||||||| ||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccg 398840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 2896116 - 2896196
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||| |||||| |||| |||||  |||| |||| ||||| ||||||||||| |||||  | ||||||||||||| ||||||    
T  2896116 gtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccg 2896196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 17425101 - 17425145
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||||||||||||||||||| ||||| ||||| ||||| ||||||    
T  17425101 acacatataattacattgaattatgtgattttatcaaattattat 17425145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 25361944 - 25361900
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| |||||||||||||||| |||| ||||| |||||||||||    
T  25361944 gacactgacacatataattacactgaattatgtgattttctcaaa 25361900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 44482288 - 44482244
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| |||||||||||||||| |||| ||||| |||||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttctcaaa 44482244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 25172699 - 25172749
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  25172699 gacaccgacacatataattacattaaaatatgtaattttatcaaattatta 25172749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 4786339 - 4786411
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    ||||| |||||||||||||||| |||| ||||| ||||||| ||| |||||  | ||||||||||||| ||||    
T  4786339 gacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 14134763 - 14134707
Alignment:
Q  210 gtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||| |||| ||||||||||| |||| ||||| ||||||||||| |||||    
T  14134763 gtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 31236584 - 31236628
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 7658520 - 7658449
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||| |||| ||||||||||| |||| ||||||||||||||||| |||||  | ||||||||| || |||||    
T  7658520 acaccgacaaatataattacactgaattatgtaattttctcaaattattagtggtgtcggcgtatcgatgtc 7658449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 12606829 - 12606880
Alignment:
Q  215 tgacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||| ||||||||||||||||||||| ||| | ||||||||||| |||||    
T  12606829 tgacaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 34201056 - 34201098
Alignment:
Q  225 acatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 20679395 - 20679468
Alignment:
Q  215 tgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    |||||| ||||| |||||||||| |||| ||||| ||||||||||| ||||| || ||||| | ||||| ||||    
T  20679395 tgacaccgacacttataattacactgaactatgtgattttctcaaattattaggggtgtcgacatgtcagtgtc 20679468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 3508103 - 3508059
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  3508103 acacatatgattacattgaattatgttattttctcaaattattat 3508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 8798838 - 8798882
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||||||||||| |||||| ||||| ||||||||||| |||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattatta 8798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 9383028 - 9382956
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatt-atggatgtcggcgtgtcaatgtccg 290  Q
    ||||||||||||||  ||||||||||| |||||| |||||||||| |||| |||| | ||||||||||| ||||||    
T  9383028 gacacagacacata--attacattgaattatgtagttttctcaaattattcatgg-tatcggcgtgtcagtgtccg 9382956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 20785468 - 20785516
Alignment:
Q  218 cacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||||||||||||||||||| || ||||| |||| |||||| |||||    
T  20785468 cacagacacatataattacattaaattatgtgatttcctcaaattatta 20785516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 24362209 - 24362269
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtc 282  Q
    |||||||||||||||| |||| ||||| ||| ||||||| |||||  | ||||||||||||    
T  24362209 gacacatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtc 24362269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 34897137 - 34897093
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||||||||||||| |||| ||||| ||||||||||| |||||    
T  34897137 gacacatataattacactgaattatgtgattttctcaaattatta 34897093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 11135301 - 11135355
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcgg 276  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||  ||||||||    
T  11135301 gacacatgtaattatattgaattatgtaattttctcaaactattagcgatgtcgg 11135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 35723385 - 35723458
Alignment:
Q  216 gacacagacacatataattacattgaaatatgt-aattttctcaaactattatggatgtcggcgtgtcaatgtc 288  Q
    ||||| ||||||||||||||||||||| |||||  ||||||||||| |||||  | ||||||||||||| ||||    
T  35723385 gacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtc 35723458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 40613502 - 40613441
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtca 283  Q
    |||||||||||||||| |||| ||||| ||||||||||| |||||  | |||||||||||||    
T  40613502 gacacatataattacactgaattatgtgattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 24343559 - 24343499
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtc 282  Q
    ||||| |||||||||| |||| ||||||||||||||||| ||||||   ||||||||||||    
T  24343559 gacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtc 24343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 33950204 - 33950144
Alignment:
Q  206 gttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    |||||||| |||||| ||||||||| |||||||| || ||||| ||||||||||| |||||    
T  33950204 gttggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 36635375 - 36635308
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||||||||||||| |||| ||||| ||||||||||| |||||  | ||| ||||||||| ||||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccg 36635308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 18513243 - 18513293
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 40179616 - 40179721
Alignment:
Q  194 tgtcgaacatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccgcat 293  Q
    |||||||||||||| | |||  ||||| ||| |||||||||||| |||| ||||| ||||| |||||||||||  | ||||  ||||||| ||||||  |    
T  40179616 tgtcgaacatgtgtcg-tgtccgacaccgacgcatataattacactgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgt 40179714  T
Q  294 catgttc 300  Q
    |||||||    
T  40179715 catgttc 40179721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 19230316 - 19230361
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    ||||| ||||||||||||||| ||||| ||||||||||| ||||||    
T  19230316 gacacctataattacattgaattatgttattttctcaaattattat 19230361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 43300668 - 43300623
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||| |||| ||||||||||| ||||||||||||||||| ||||||    
T  43300668 gacaaatatgattacattgaattatgtaattttctcaaattattat 43300623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 30982879 - 30982923
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaa 260  Q
    ||||| ||||| |||||||||| |||||||||| |||||||||||    
T  30982879 gacaccgacacttataattacactgaaatatgtgattttctcaaa 30982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 43299983 - 43300023
Alignment:
Q  227 atataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||| ||||||||||| ||||||||||||||||| ||||||    
T  43299983 atatgattacattgaattatgtaattttctcaaattattat 43300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 192252 - 192324
Alignment:
Q  218 cacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||||||| | ||||||||  ||| ||||||||||||||||| |||||  | ||||||||||||| ||||||    
T  192252 cacagacacttgtaattacaccgaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtccg 192324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 225275 - 225343
Alignment:
Q  222 gacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    ||||| ||||||||||||| | ||||| ||||||||||| ||||||   ||||||||||||| ||||||    
T  225275 gacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccg 225343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 92851 - 92791
Alignment:
Q  230 taattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccg 290  Q
    |||||||| |||| ||||||||||||||||| |||||  | ||||||||||||| ||||||    
T  92851 taattacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccg 92791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 6370 - 6320
Alignment:
Q  216 gacacagacacatataattacattgaaatatgtaattttctcaaactatta 266  Q
    ||||| ||||||||||||||||||||| |||| |||||| ||||| |||||    
T  6370 gacaccgacacatataattacattgaattatgcaattttgtcaaattatta 6320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 16103 - 16006
Alignment:
Q  193 atgtcgaacatgtgttggtgtttgacacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgtcaatgtccgc 291  Q
    |||||| ||||| | |||||| ||||||  |||| |||| ||| ||| |||||||||||||||||||| || ||| ||| |||| |||||| |||||||    
T  16103 atgtcggacatgcgctggtgtctgacaccaacacgtatatttagatt-aaatatgtaattttctcaaattagtatcgatatcggtgtgtcattgtccgc 16006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 28907 - 28843
Alignment:
Q  217 acacagacacatataattacattgaaatatgtaattttctcaaactattatggatgtcggcgtgt 281  Q
    |||| ||||||||||||||||||||| ||||  ||||||| ||| |||||  | |||||||||||    
T  28907 acaccgacacatataattacattgaattatgcgattttcttaaattattaacggtgtcggcgtgt 28843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
Q  223 acacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  99944 acacatataattacattgaattatgttattttctaaaattattat 99900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 240021 - 240073
Alignment:
Q  215 tgacacagacacatataattacattgaaatatgtaattttctcaaactattat 267  Q
    |||||| ||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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