View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_18 (Length: 395)
Name: NF20016_high_18
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 31841123 - 31841494
Alignment:
| Q |
13 |
aatatagttatgaatcatgcaagtagtaaaagttgagcagtaattctactccaaccgtgatatcactcactacatttatgatatagatacatgatatttt |
112 |
Q |
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| T |
31841123 |
aatatagttatgaatcatgcaagtagtaaaagttgagcagtaattctactccaaccgtgatatcactcattacatttatgatatagatacatgatattct |
31841222 |
T |
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| Q |
113 |
gtacatttatatacgtacgtacaatataaattaaccgagtcaggtcctgcattctgctctgcatagcgtacaatattactacgtgtagtaaatgatatac |
212 |
Q |
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| T |
31841223 |
gtacatttatatacgtacgtacaatataaattaaccgagtcaggtcctgcattctgctctgcatagcgtacaatactactacgtgtagtaaatgatatac |
31841322 |
T |
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| Q |
213 |
gatagtataaagttataaacttaattttacattggccatgttgagtgttgttcacaaaatatattaattaattttggtctcttcttttgtgttgtgaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31841323 |
gatagtataaagttataaacttaattttacattggccatgttgagtgttgttcacaaaatat----attaattttggtctcttcttttgtgttgtgaata |
31841418 |
T |
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| Q |
313 |
gtgtttaacatatcattcattcattaactagttattaattattctgttctggtaacagataacttatttaacaagc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841419 |
gtgtttaacatatcattcattcattaactagttattaattattctgttctggtaacagataacttatttaacaagc |
31841494 |
T |
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