View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_19 (Length: 392)
Name: NF20016_high_19
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 158 - 392
Target Start/End: Original strand, 28624815 - 28625064
Alignment:
| Q |
158 |
cacagaacaatggaaccacatctaaatgcagcctccattctcagaaccaccagcagcaacataccatattcttgtcttcctcaaccattcctgtctctta |
257 |
Q |
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| T |
28624815 |
cacagaacaatggaaccacatctaaatgcagcctccattctcagaaccaccagcagcaacataccatattcttgtcttcctcaaccattcctgtctctta |
28624914 |
T |
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| Q |
258 |
ctacaaggatgctatct---------------tcttcttcaacaaccccttcatctgaaacaagaacagcttactcttcttcaaaccctaacccttcatt |
342 |
Q |
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| T |
28624915 |
ctacaaggatgctatcttcttcttcatcttcatcttcttcaacaaccccttcatctgaaacaagaacagcttactcttcttcaagccctaacccttcatt |
28625014 |
T |
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| Q |
343 |
caagaacctttctctattctccaacaatcattctcttcaaagtatgacgc |
392 |
Q |
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| T |
28625015 |
caagaacctttctctattctccaacaatcattctcttcaaagtatgacgc |
28625064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 28624673 - 28624783
Alignment:
| Q |
17 |
tttcagaaaaaatagggtgcacaagaaataagtagggtgggaaaaggaatagtaattaattttaaactaacatgggcctaagccaaagaagcccatgctc |
116 |
Q |
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| T |
28624673 |
tttcagaaaaaatagggtgctcaagaaatgtgtagggtgggaaaagtaatagtaattaatttcaaactaacatgggcctaagccaaaaaagcccatgccc |
28624772 |
T |
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| Q |
117 |
cccaatgtgtt |
127 |
Q |
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| T |
28624773 |
cccaatgtgtt |
28624783 |
T |
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