View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_20 (Length: 385)
Name: NF20016_high_20
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_20 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: scaffold1445 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 1578 - 1225
Alignment:
| Q |
16 |
caatcttcaactatagtacagggtctcatgatcacaataaatcaaactataaagtactgacacgacacaacactgacacgtcaacacgagttataatttg |
115 |
Q |
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| T |
1578 |
caatcttcaactatagtacagggtctcatgatcacaataaatcaaactattaagtactgacacgacacaacactgacacgtcaacacgagttataatttg |
1479 |
T |
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| Q |
116 |
aaaatacgatataattgaatgtgatcacgttgtcagtatcatgccatgtcagacactaacactaacacatgttgtcttcaatcataagtatgagtgctac |
215 |
Q |
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| T |
1478 |
aaaatacgatataattgaatgtgatcacgttgtcagtatcatgccatgtcagacactaacactaacacatgttgtcttcaatcataagtatgagtgctac |
1379 |
T |
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| Q |
216 |
ataaaaatcaaataatgaattagaattcccattaccacggaattgacatgggtaagacccttgtcctccccacaacccaagaacaatgcaatccaactcg |
315 |
Q |
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| T |
1378 |
ataaaaatcaaataatgaattagaattaccattaccacggaattgacattggtaagacctttgcctttcccagaagccaagaacaactcattccaactcg |
1279 |
T |
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| Q |
316 |
gctgatagcatcgctgaaaactccgaatatcgaaaggacgagagaaccaaacaa |
369 |
Q |
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||||||| | ||| ||||||||| |||| || |||||||| |||||||||||| |
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| T |
1278 |
gctgataacttcgatgaaaactctgaatttccgaaggacgaaagaaccaaacaa |
1225 |
T |
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