View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_21 (Length: 379)
Name: NF20016_high_21
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 394178 - 393849
Alignment:
| Q |
18 |
gtcttgcaaagaactattgtcaagccaacactttgatgttaacgaccacttcatacgacaatataatcatcatcatatcctctgaagaagacaaatgact |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
394178 |
gtcttgcaaagaactattgtcagaccaacactttgatgttaacgactacttcatacgacaatataatcatcatcatatcctgtgaagaagacaaatgact |
394079 |
T |
|
| Q |
118 |
cattgataatgacaaaatgaagataaacaaatgtgaaaacaccattagattagacgagaaataatgtaatagagatcattacaaccatgtaaagaaataa |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |
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| T |
394078 |
cattgataatgataaaatgaagataaacaaatgtgaaaacaccattagattagacgagaaataatataatagagatcaatagaaccatgtaaagaaataa |
393979 |
T |
|
| Q |
218 |
ataataataacaaacatcaaattgcaaaaccctttaaattgcaaaaccctttttacaaataatgcttgactatggttagaaggtttaannnnnnnnnaag |
317 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
393978 |
ataataataacaaacatcaaattgcaaaacc-----------------ctttttacaaataatgcgtgactatggttagaaggtttaatttttttttaag |
393896 |
T |
|
| Q |
318 |
gaggttagaagatttaattgttactcgtccatctcacataatggtat |
364 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
393895 |
gaggttagaaggtttaattgttactcatccatctcacataatggtat |
393849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 20537636 - 20537411
Alignment:
| Q |
18 |
gtcttgcaaagaactattgtcaagccaacactttgatgttaacgaccacttcatacgacaatataatcatcatcatatcctctgaagaagacaaatgact |
117 |
Q |
| |
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|||||||||||||| ||||| | |||||||||||||||||| ||||||||| || |||||||||||| | ||||| ||| |||||||||||||||||| |
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| T |
20537636 |
gtcttgcaaagaaccattgttaggccaacactttgatgttactcaccacttcaaacaacaatataatcaccttcata-cctatgaagaagacaaatgact |
20537538 |
T |
|
| Q |
118 |
cattgataatgacaaaatgaagataaacaaatgtgaaaacaccattagattagacgagaaataatgtaatagagatcattacaaccatgtaaagaaataa |
217 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||| || ||||||||| |||||| |
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| T |
20537537 |
cattgataatggaaaaatgaagaaaaacaaatgtgaaaacaccattagattagaggacaaataaaataatagagatcgataaaaccatgtacagaaat-- |
20537440 |
T |
|
| Q |
218 |
ataataataacaaacatcaaattgcaaaac |
247 |
Q |
| |
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|||| ||||||| |||||||| |||||| |
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| T |
20537439 |
-caatagtaacaaatatcaaattacaaaac |
20537411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 10459196 - 10459034
Alignment:
| Q |
18 |
gtcttgcaaagaactattgtcaagccaacactttgatgttaacgaccacttcatacgacaatataatcatcatcatatcctctgaagaagacaaatgact |
117 |
Q |
| |
|
|||||||||||||| ||| ||| ||| || ||||||||||| | |||||||||||| ||| |||||||| ||| | | ||| |||||||||||||||||| |
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| T |
10459196 |
gtcttgcaaagaaccattatca-gcccacgctttgatgttatccaccacttcatacaacactataatcaccattaaaccctgtgaagaagacaaatgact |
10459098 |
T |
|
| Q |
118 |
cattgataatgacaaaatgaagataaacaaatgtgaaaacaccattagattagacgagaaataa |
181 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||| || || ||||||||||| ||||||||| |
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|
| T |
10459097 |
cattaataatggaaaaatgaagaaaaacaaatgtggaagcattattagattagaggagaaataa |
10459034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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