View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_26 (Length: 360)
Name: NF20016_high_26
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_26 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 43275509 - 43275170
Alignment:
| Q |
18 |
acttatatatgattgcaaagatgtttcaacagctccatatggagaatattggagacagataaagagtatatcagttttacatcttctcagtgctaaaaga |
117 |
Q |
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| T |
43275509 |
acttatatatgattgcaaagatgtttcaacagctccatatggagaatattggagacagataaagagtatatcagttttacatcttctcagtgctaaaaga |
43275410 |
T |
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| Q |
118 |
gttcaatctcttcgtgccgtgagagaggaagaagtaggtttaatgatggagaaaataaagcactattcttctaaatcattacctgtgaatataagtgaat |
217 |
Q |
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| T |
43275409 |
gttcaatctcttcgtgccgtgagagaggaagaagtaggtttaatgatggagaaaataaagcactattcttctaaatcattacctgtgaatataagtgaat |
43275310 |
T |
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| Q |
218 |
tagcctccaaaattactaatgatatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatt |
317 |
Q |
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| T |
43275309 |
tagcctccaaaattactaatgatatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatt |
43275210 |
T |
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| Q |
318 |
taacgagtcacttagtgcttttattgttggagcctatgtt |
357 |
Q |
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| T |
43275209 |
taacgagtcacttagtgcttttattgttggagcctatgtt |
43275170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 43311210 - 43310923
Alignment:
| Q |
18 |
acttatatatgattgcaaagatgtttcaacagctccatatggagaatattggagacagataaagagtatatcagttttacatcttctcagtgctaaaaga |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
43311210 |
acttttatatgattgcaaagatgtttcaacagctccatatggagaatattggagacagataagaagcatttcagttttacatcttctcagtgctaaaaga |
43311111 |
T |
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| Q |
118 |
gttcaatctcttcgtgccgtgagagaggaagaagtaggtttaatgatggagaaaataaagcactattcttctaaatcattacctgtgaatataagtgaat |
217 |
Q |
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| T |
43311110 |
gttcaatctcttagcactgtgagagaggaagaaattggtttaatgatggagaaaataaaccattgttgttccacatctttacccgtgaatataagtgatt |
43311011 |
T |
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| Q |
218 |
tagcctccaaaattactaatgatatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagtt |
305 |
Q |
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| T |
43311010 |
tactctccacaactatcaatgatatagtttgtagggttgctttggggagaaagtatagtggtgaaagtgggaagggatttaaaaagtt |
43310923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 37 - 357
Target Start/End: Complemental strand, 43268603 - 43268280
Alignment:
| Q |
37 |
gatgtttcaacagctccatatggagaatattggagacagataaagagtatatcagttttacatcttctcagtgctaaaagagttcaatctcttcgtgccg |
136 |
Q |
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| T |
43268603 |
gatgtttcatcagctccatatggagagtattggaggcagttaaggagcatatgtgtgttacatcttcttagtgctaaaagcgttcgttcttttcgcgctg |
43268504 |
T |
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| Q |
137 |
tgagagaggaagaagtaggtttaatgatggagaaaataaagcactattcttct---aaatcattacctgtgaatataagtgaattagcctccaaaattac |
233 |
Q |
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| T |
43268503 |
taagagaggaagaaacgggtttaatgatggagaaaataaagcactgttcttcttccacttcattaccagcgaatttaagtgaattaatggcaacaactac |
43268404 |
T |
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| Q |
234 |
taatgatatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatttaacgagtcacttagt |
333 |
Q |
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| T |
43268403 |
gaatgatatagtttgtagggttgttttgggaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagttacttggt |
43268304 |
T |
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| Q |
334 |
gcttttattgttggagcctatgtt |
357 |
Q |
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| T |
43268303 |
gcttttgttgttggggactatgtt |
43268280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 92683 - 92604
Alignment:
| Q |
47 |
cagctccatatggagaatattggagacagataaagagtatatcagttttacatcttctcagtgctaaaagagttcaatct |
126 |
Q |
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| T |
92683 |
cagctccttatggtcactattggagacaaataaggagtatatgtgttttacatcttcttagtgccaaaaaggttcaatct |
92604 |
T |
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