View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_30 (Length: 338)
Name: NF20016_high_30
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 41541015 - 41541322
Alignment:
| Q |
16 |
caatttaatgcggacatggagtgaaacacacacataaaaataaatactttcagcatattttaaaaaatatagtaccataatacttcttaagcttgcataa |
115 |
Q |
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| T |
41541015 |
caatttaatgcggacatggagtgaaacacacacataaaaataaatactttcagcatattttaaaaaatatagtaccataatacttcttaagcttgcataa |
41541114 |
T |
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| Q |
116 |
ctgaaagacaacaaccaaaggcagggatgagtcatgtgtctccaagcattgttgcattttcacagcatattcatccaaagagtgcaatgaattctgtttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41541115 |
ctgaaagacaacaaccaaaggcagggatgagtcatgtgtctccaagcattgttgcatcttcacagcatattcatccaaagagtgcaatgaattctgtttc |
41541214 |
T |
|
| Q |
216 |
ccctatagtatacataagagtaattagttatcatgctgaaaaaataatcatagagatcgtagatattttttattttaatcatttcctaagtaatttcatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
41541215 |
ccctatagtatacataagagtaattagttatcatgctgaaaaaataatcatagagatcgtagat-ttttttattttaatcatttcctaagtaattttatg |
41541313 |
T |
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| Q |
316 |
tgtatgttt |
324 |
Q |
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||||||||| |
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| T |
41541314 |
tgtatgttt |
41541322 |
T |
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