View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_38 (Length: 280)
Name: NF20016_high_38
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 12127746 - 12127476
Alignment:
| Q |
1 |
cacatcgcaaatcctctcaaatccactcatctttgctgcttaaacaaggtataaggaagagtttttatcattggtttttgttt---atcactcgtgttct |
97 |
Q |
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| T |
12127746 |
cacatcgcaaatcctctcaaatcaactcatctttgctgcttaaacaaggta---ggaagaacttttatcattgattttttttttttatcacttgtgttct |
12127650 |
T |
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| Q |
98 |
atttgttcctgtgtttccaatttttgtttccttctgattccaaatgttctttttgttgcatcttctctcccatttcaggattttagtcaaatctcttcga |
197 |
Q |
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| T |
12127649 |
atttgttctcgtgtttccaatttttgtttccttctcattccaaatgttctttttgttgcatcttctctcccatttcaggattttagtcaaatctcttcga |
12127550 |
T |
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| Q |
198 |
tgctccgaggcttccttcaaactgcaatttttcgattgataacaaaattttgttttgtgatagcatcttcatct |
271 |
Q |
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| T |
12127549 |
tgctccgaggcttccttcaaactgcagtttttcgattgataacaaaattttgttttgtgatagcatcttcatct |
12127476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 270
Target Start/End: Complemental strand, 12114442 - 12114281
Alignment:
| Q |
109 |
tgtttccaatttttgtttccttctgattccaaatgttctttttgttgcatcttctctcccatttcaggattttagtcaaatctcttcgatgctccgaggc |
208 |
Q |
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| T |
12114442 |
tgtttccaatttttgtttccttcttattcaaaacgttctttttgttgcatcttctctcccatttcaggagttttgtcaaatctcttcgatgatcggtgac |
12114343 |
T |
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| Q |
209 |
ttccttcaaactgcaatttttcgattgataacaaaattttgttttgtgatagcatcttcatc |
270 |
Q |
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| T |
12114342 |
tttcttcaaactaccgatttgtgactgattacacaattttgttttgtgatcgcatcttcatc |
12114281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 2372468 - 2372584
Alignment:
| Q |
155 |
gcatcttctctcccatttcaggattttagtcaaatctct----tcgatgctccgaggcttccttcaaactgcaatttttcgattgataacaaaattttgt |
250 |
Q |
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|||| ||||||| ||||||||||||| |||||||| | || |||||||||| |||||||||||| ||| ||| || || | ||| |||||||| |
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| T |
2372468 |
gcatgttctctcgcatttcaggatttctatcaaatcttttcaatcaatgctccgagacttccttcaaacagcagctttgtgactggttacacaattttgt |
2372567 |
T |
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| Q |
251 |
tttgtgatagcatcttc |
267 |
Q |
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| T |
2372568 |
tttgtgatagcatcttc |
2372584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 38702839 - 38702915
Alignment:
| Q |
156 |
catcttctctcccatttcaggattttagtcaaatctcttcgatgctccgaggcttccttcaaactgcaatttttcga |
232 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||| |||| ||||||| |
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| T |
38702839 |
catcttctctaccatttcaggatttctatcaaatctctttgatgcttcgaggcttccttcaaatcgcaacttttcga |
38702915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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