View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_39 (Length: 279)
Name: NF20016_high_39
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 5140777 - 5141039
Alignment:
| Q |
1 |
aaaaacaagttttaaattcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatctatctaaccaaaaccac |
100 |
Q |
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| T |
5140777 |
aaaaacaagttttaaactcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatctatctaaccaaaacaac |
5140876 |
T |
|
| Q |
101 |
catacaatccacaaatgaatgaatttatatgtagagaacatgaagaacctaatcaggaaatggtgcaacatttagaccaactaatctaatctaagatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5140877 |
catacaatccacaaatgaatgaatttatatgtagagaacatgaagaacctaatcaggaaatggtgcaacagttagaccaactaatctaatctaagatttt |
5140976 |
T |
|
| Q |
201 |
tagaaacgataatgtaaattttaaatcttggtttctcatatgcctaaaaaatccacaattttt |
263 |
Q |
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| T |
5140977 |
tagaaacggtaatgtaaattttaaatcttggtttcccatatgcctaaaaaatccacaattttt |
5141039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 38921378 - 38921207
Alignment:
| Q |
1 |
aaaaacaagttttaaattcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatctatctaaccaaaaccac |
100 |
Q |
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||||||||| ||||||||||||||| | || |||||||| ||||||||||||| ||| | | |||||||| || |||||||||||||||||||||||| |
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| T |
38921378 |
aaaaacaaggtttaaattcatttcttaacacactaaatcggatatcaatattatcattttttatgtttgttctaataatgatctatctaaccaaaaccac |
38921279 |
T |
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| Q |
101 |
catacaatccacaaatgaatgaatttatatgtagagaacatgaagaacctaatcaggaaatggtgcaacattt |
173 |
Q |
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| T |
38921278 |
cacacaatacacaaatgaatgaatttatacgtatag-acatgaagaacctaaccatgaaatgctgcaacattt |
38921207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 10545345 - 10545266
Alignment:
| Q |
94 |
aaaccaccatacaatccacaaatgaatgaatttatatgtagagaacatgaagaacctaatcaggaaatggtgcaacattt |
173 |
Q |
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||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||| |||| || |||||| |||||||||| |
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| T |
10545345 |
aaaccaccacacaatacacaaatgaatgaatttgtatgtatagaacatgaagaagctaaccatgaaatgctgcaacattt |
10545266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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