View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_high_4 (Length: 578)
Name: NF20016_high_4
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 39304818 - 39305031
Alignment:
| Q |
19 |
acataaccaagatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaacctccttatatgactactgatcaacca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39304818 |
acataaccaagatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaaactccttatatgactactgatcaacca |
39304917 |
T |
|
| Q |
119 |
tttccacttcctttctctccaaattcgattcaaaaacaattacgaccgcaagatcagattgattccatagggcattggtatgaatgagtaagaccaagct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304918 |
tttccacttcctttctctccaaattcgattcaaaaacaattacgacagcaagatcagattgattccatagggcattggtatgaatgagtaagaccaagct |
39305017 |
T |
|
| Q |
219 |
aattttatgtttgg |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39305018 |
aattttatgtttgg |
39305031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 323 - 562
Target Start/End: Original strand, 39305122 - 39305367
Alignment:
| Q |
323 |
cacatacaattaatgtaatgnnnnnnngccacttttcaaaataaaatgatcttgaagcttttgtttgtcattg----tcgtgtaatattgacaaggaaaa |
418 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39305122 |
cacatacaattaatgtaatgtttttt-gccacttttcaaaataaaatgatcttgaagcttttgtttgtcattgattgtcgtgtaatattgacaaggaaaa |
39305220 |
T |
|
| Q |
419 |
tgataaattgcacaaaagttgcactga---gtgaatatgcacaacaagtccaaattcaatcatatgccaatattcaaacagaatcactaaacgtacttat |
515 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39305221 |
tgataaattgcacaaaagttgcactaattagtgaatatgcacaacaagtctaaattcaatcatatgccaatattcaaacagaatcactcaacgtacttat |
39305320 |
T |
|
| Q |
516 |
gatggccaatgactcatgagaggattctggtttgttaattaagttac |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39305321 |
gatggccaatgactcatgagaggattctggtttgttaattaagttac |
39305367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University