View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_41 (Length: 277)
Name: NF20016_high_41
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 41332029 - 41331811
Alignment:
| Q |
12 |
aaaggaaaaggagaaaagctaataacatacttgtgcaggtttttaaccaaatatatgtgtacgaaagtcccactttggggagtttaaaaacattagagag |
111 |
Q |
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| T |
41332029 |
aaaggaaaaggaaaaaagctaataacatacttgtgcaggtttttaaccaaatatatgtgtacgaaagtcccactttggggagtataaaaacattagagag |
41331930 |
T |
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| Q |
112 |
gaggagtagatataaaaaagaagtgcatgtatatggactataagtaattaaaaagtgcaactacatgtttccttagtggtcttaagaccgacatgaacca |
211 |
Q |
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| T |
41331929 |
gaggagtagatataaaaaagaagtgcatgtatatggactataagtaattaaaaagtgcaactacatgtttccttagtggtcttaagaccgacatgaacca |
41331830 |
T |
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| Q |
212 |
tagttttattttagttcaa |
230 |
Q |
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| T |
41331829 |
tagttttattttagttcaa |
41331811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 16742681 - 16742774
Alignment:
| Q |
25 |
aaaagctaataacatacttgtgcaggtttttaaccaaatatatgtgtacgaaagtcccactttggggagtttaaaaacattagagaggaggagt |
118 |
Q |
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| T |
16742681 |
aaaaggtaatagtatacttgtgcaagttttttaccaaacatatgtataacttagtcccacatcggtgagtttaagaacattagagaggaggagt |
16742774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 39413784 - 39413737
Alignment:
| Q |
92 |
agtttaaaaacattagagaggaggagtagatataaaaaagaagtgcat |
139 |
Q |
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| T |
39413784 |
agtttaaaaacaatagagaggaggagtagttataaaatagaagcgcat |
39413737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 28430894 - 28430846
Alignment:
| Q |
91 |
gagtttaaaaacattagagaggaggagtagatataaaaaagaagtgcat |
139 |
Q |
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||||||||||||||||||||| | ||| | |||||||| |||||||||| |
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| T |
28430894 |
gagtttaaaaacattagagagcaagagcatatataaaagagaagtgcat |
28430846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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