View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_high_45 (Length: 268)

Name: NF20016_high_45
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_high_45
NF20016_high_45
[»] chr4 (7 HSPs)
chr4 (18-268)||(25568560-25568817)
chr4 (31-138)||(4135099-4135205)
chr4 (30-146)||(4322411-4322526)
chr4 (33-97)||(4334133-4334197)
chr4 (22-146)||(6499643-6499766)
chr4 (39-146)||(4125749-4125855)
chr4 (26-146)||(6547199-6547318)
[»] chr6 (20 HSPs)
chr6 (28-146)||(5691420-5691537)
chr6 (22-146)||(5148268-5148391)
chr6 (22-138)||(5395613-5395728)
chr6 (32-146)||(5094621-5094734)
chr6 (40-146)||(5104181-5104286)
chr6 (40-146)||(5369048-5369153)
chr6 (32-143)||(5075043-5075153)
chr6 (32-146)||(5424333-5424446)
chr6 (45-146)||(5261455-5261555)
chr6 (45-146)||(5285454-5285554)
chr6 (22-138)||(5183269-5183384)
chr6 (22-97)||(5342264-5342339)
chr6 (32-146)||(5158810-5158923)
chr6 (29-146)||(5133214-5133330)
chr6 (22-143)||(5277263-5277383)
chr6 (32-146)||(5348955-5349070)
chr6 (33-138)||(5355933-5356037)
chr6 (50-109)||(5445675-5445734)
chr6 (32-146)||(5068383-5068496)
chr6 (22-143)||(5175436-5175556)
[»] chr7 (1 HSPs)
chr7 (22-146)||(36215201-36215324)
[»] chr2 (1 HSPs)
chr2 (45-146)||(22585630-22585730)
[»] chr5 (1 HSPs)
chr5 (39-141)||(8876390-8876491)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 25568560 - 25568817
Alignment:
Q  18 aataatgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  25568560 aataatgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaacgtccttgttgagcgaagccttgtgactattgatgaattggaac 25568659  T
Q  118 agacttggaatgcatgatttgttgcgagaatgat-------tattattattataatgttaaataaaaattgagcctgttttcacaattacagattatgaa 210  Q
    ||||||||||||||||||||||||||||||||||       |  |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  25568660 agacttggaatgcatgatttgttgcgagaatgatgaaaaaattatattattatattgttaaataaaaattgagtctgttttcacaattacagattatgaa 25568759  T
Q  211 taacgatggccattatggtgctttcctacgccatgataattatccaaattggttgacc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25568760 taacgatggccattatggtgctttcctacgccatgataattatccaaattggttgacc 25568817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 4135205 - 4135099
Alignment:
Q  31 atatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgc 130  Q
    ||||||| ||||||||||  |||| ||| ||||| ||||||| ||||||||||||||||||| |||| |||||||||| ||   ||||  ||||||||||    
T  4135205 atatattaaatggttgtggtctttttgctgaaatcggaataagtgtccttgttgagcgaagccttgtaactattgatg-ataaaaacaagcttggaatgc 4135107  T
Q  131 atgatttg 138  Q
    ||||||||    
T  4135106 atgatttg 4135099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 4322526 - 4322411
Alignment:
Q  30 catatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatg 129  Q
    |||||||| ||||||| || | |||  |||||||||||||||| ||||||||||||| ||||| |||| ||  |||||| ||  |||||  ||||| |||    
T  4322526 catatattaaatggttctggatttttcgcagaaattggaataagtgtccttgttgagagaagccttgtaacggttgatg-ataagaacaagcttggcatg 4322428  T
Q  130 catgatttgttgcgaga 146  Q
    ||||||||| |||||||    
T  4322427 catgatttgctgcgaga 4322411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 4334133 - 4334197
Alignment:
Q  33 atattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgt 97  Q
    ||||| ||||| |||| |||||  || ||||||||||||| ||||||||||||||||||| ||||    
T  4334133 atattaaatggctgtggacttttcgctgaaattggaataagtgtccttgttgagcgaagccttgt 4334197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 6499766 - 6499643
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||||||||| ||||| ||||| |||| | ||| ||| || |||||||| || |||||||| ||||||||| || | | ||||||  ||| ||||||  |    
T  6499766 atgtaatacaaatattaaatgggtgtggattttttgctgatattggaattaaagtccttgtagagcgaagccttttaattattgac-aataggaacaagc 6499668  T
Q  122 ttggaatgcatgatttgttgcgaga 146  Q
    || ||||||||||||||||| ||||    
T  6499667 ttagaatgcatgatttgttgagaga 6499643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 4125855 - 4125749
Alignment:
Q  39 aatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttg 138  Q
    ||||| |||| |||||  || ||||||||||||| |||||||||||| |||||| |||| ||  |||||| ||  |||||  ||||| ||||||||||||    
T  4125855 aatggctgtggacttttcgctgaaattggaataagtgtccttgttgaacgaagccttgtaacagttgatg-ataagaacaagcttggcatgcatgatttg 4125757  T
Q  139 ttgcgaga 146  Q
     |||||||    
T  4125756 ctgcgaga 4125749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 6547318 - 6547199
Alignment:
Q  26 aatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgg 125  Q
    |||||| ||||| ||||| |||  | ||| ||| || |||||||| || |||||||| ||||||||| |||| ||| ||||  ||| ||||||  ||| |    
T  6547318 aatacaaatattaaatgggtgtagattttttgctgatattggaattaaagtccttgtagagcgaagccttgtaactgttgac-aataggaacaagcttag 6547220  T
Q  126 aatgcatgatttgttgcgaga 146  Q
    |||||||||||||||| ||||    
T  6547219 aatgcatgatttgttgagaga 6547199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 5691537 - 5691420
Alignment:
Q  28 tacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaa 127  Q
    ||||||||||  |||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||| || ||||||| ||| |||    
T  5691537 tacatatattagatggttgtgatctttatgcaggaattggaataaatgtccttgtggagcgaagccttgtgactgttgatg-ataggaacaggcttagaa 5691439  T
Q  128 tgcatgatttgttgcgaga 146  Q
    |||||||||||||||||||    
T  5691438 tgcatgatttgttgcgaga 5691420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 5148391 - 5148268
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||  | ||||||||| |||||||| |||||| ||  |||  | |    
T  5148391 atgtcatacatatattaaatggctgtgaactttatgcagaaattggaataaatgtcctactggagcgaagccttgtgactgttgatg-atatgaatcggc 5148293  T
Q  122 ttggaatgcatgatttgttgcgaga 146  Q
    |||||||||||||||||||||||||    
T  5148292 ttggaatgcatgatttgttgcgaga 5148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 5395613 - 5395728
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||| ||||||||||| |||||| | ||||||| ||||||||||||| ||| ||||||||||||||||||| |||| ||| |||||| || |||||||||    
T  5395613 atgttatacatatattaaatggtagcgaactttttgcagaaattggagtaagtgtccttgttgagcgaagccttgtaactgttgatg-ataggaacagac 5395711  T
Q  122 ttggaatgcatgatttg 138  Q
    ||| |||||||||||||    
T  5395712 ttgcaatgcatgatttg 5395728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 5094621 - 5094734
Alignment:
Q  32 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 131  Q
    |||||| ||||| |||| ||||| ||| ||||||||||||| | ||||||||||||| ||  |||| ||| |||||| ||  ||||| ||||||||||||    
T  5094621 tatattaaatggatgtggactttttgctgaaattggaataagtatccttgttgagcgtagtcttgtaactgttgatg-ataagaacaaacttggaatgca 5094719  T
Q  132 tgatttgttgcgaga 146  Q
    |||||||||||||||    
T  5094720 tgatttgttgcgaga 5094734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 5104286 - 5104181
Alignment:
Q  40 atggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgt 139  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||||||||||  || | ||| |||||| ||  ||||| ||||||||||||||||||||    
T  5104286 atggatgtggactttttgcagaaattggaataagtatccttgttgagcgaagtcttataactgttgatg-ataagaacaaacttggaatgcatgatttgt 5104188  T
Q  140 tgcgaga 146  Q
    |||||||    
T  5104187 tgcgaga 5104181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 5369048 - 5369153
Alignment:
Q  40 atggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgt 139  Q
    |||| |||| ||||| ||| ||||||||||||| | ||||||||||||||||  |||| ||| |||||| ||  ||||| ||||||||||||||||||||    
T  5369048 atggatgtggactttttgctgaaattggaataagtatccttgttgagcgaagtcttgtcactgttgatg-ataagaacaaacttggaatgcatgatttgt 5369146  T
Q  140 tgcgaga 146  Q
    |||||||    
T  5369147 tgcgaga 5369153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 5075153 - 5075043
Alignment:
Q  32 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 131  Q
    |||||| ||||| |||||||||| ||| ||||||||| ||| ||| ||||||||||||||| |||| ||| | |||| || ||||||  |||||||||||    
T  5075153 tatattaaatggatgtgaactttttgctgaaattggagtaagtgtacttgttgagcgaagccttgtaactgtcgatg-ataggaacaagcttggaatgca 5075055  T
Q  132 tgatttgttgcg 143  Q
    ||||||| ||||    
T  5075054 tgatttgctgcg 5075043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 5424333 - 5424446
Alignment:
Q  32 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 131  Q
    |||||| ||||| |||| ||||| ||| ||||||||||||| | ||||||||||||| ||  |||| ||| |||||| ||   |||| ||||||||||||    
T  5424333 tatattaaatggatgtggactttttgctgaaattggaataagtatccttgttgagcggagtcttgtcactgttgatg-ataataacaaacttggaatgca 5424431  T
Q  132 tgatttgttgcgaga 146  Q
    |||||||||||||||    
T  5424432 tgatttgttgcgaga 5424446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 5261555 - 5261455
Alignment:
Q  45 tgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcga 144  Q
    |||| |||| ||||||||||||||||||  |||||||||||| ||||| |||||| | |||||| ||  |||||  ||||||||||||| ||||||||||    
T  5261555 tgtggacttcatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacatgcttggaatgcatggtttgttgcga 5261457  T
Q  145 ga 146  Q
    ||    
T  5261456 ga 5261455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 5285554 - 5285454
Alignment:
Q  45 tgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcga 144  Q
    |||| |||||||||||||||||||||||  |||||||||||| ||||| |||||| | |||||| ||  |||||  ||||||||||||| |||| |||||    
T  5285554 tgtggactttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacatgcttggaatgcatggtttgctgcga 5285456  T
Q  145 ga 146  Q
    ||    
T  5285455 ga 5285454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 5183384 - 5183269
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||| ||||||||||| |||||| | ||| ||| ||||||||||||| ||| ||||||||||||| ||||| |||| ||| |||||| || |||||| ||    
T  5183384 atgttatacatatattaaatggtagcgaattttttgcagaaattggagtaagtgtccttgttgagagaagccttgtaactgttgatg-ataggaacaaac 5183286  T
Q  122 ttggaatgcatgatttg 138  Q
    |   |||||||||||||    
T  5183285 tgcaaatgcatgatttg 5183269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 5342264 - 5342339
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgt 97  Q
    |||| ||||| ||||| ||||| |||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||    
T  5342264 atgtcatacaaatattaaatggctgtggactttttgcagaaattggaataagtgttcttgttgagcgaagccttgt 5342339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 5158923 - 5158810
Alignment:
Q  32 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 131  Q
    |||||| ||||| |||||||||| ||  |||||||||||||   ||||||||||||| ||  |||| ||| ||||||  |  ||||| ||||||||||||    
T  5158923 tatattaaatggatgtgaactttttggtgaaattggaataagcatccttgttgagcgtagtcttgttactgttgatgg-taagaacaaacttggaatgca 5158825  T
Q  132 tgatttgttgcgaga 146  Q
    |||||||||||||||    
T  5158824 tgatttgttgcgaga 5158810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 5133330 - 5133214
Alignment:
Q  29 acatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaat 128  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||| | | ||| ||||| ||||| |||| ||| ||||||  |  | |||| ||||||||    
T  5133330 acatatattaaatggttgtggactttttgccgaaattggaataagtattcttattgagagaagccttgtaactgttgatg-ctaaggacaggcttggaat 5133232  T
Q  129 gcatgatttgttgcgaga 146  Q
    ||||||||||||| ||||    
T  5133231 gcatgatttgttgagaga 5133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 5277263 - 5277383
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||| ||||||||||| ||||| |||| | ||| |||||||  |||||||| ||||||||||||||||||||| || ||  ||||| |||   ||||  |    
T  5277263 atgttatacatatattaaatggctgtggattttttgcagaagatggaataagtgtccttgttgagcgaagcttagtaacggttgat-aataaaaacaagc 5277361  T
Q  122 ttggaatgcatgatttgttgcg 143  Q
    ||||||||||| ||||||||||    
T  5277362 ttggaatgcataatttgttgcg 5277383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 5348955 - 5349070
Alignment:
Q  32 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgc- 130  Q
    |||||| ||||| |||||||||| ||| ||||||||||||| | || ||||||| |||||  |||| ||| |||||| ||  ||||| |||||||||||     
T  5348955 tatattaaatggatgtgaactttttgctgaaattggaataagtatctttgttgatcgaagtcttgtcactgttgatg-ataagaacaaacttggaatgca 5349053  T
Q  131 -atgatttgttgcgaga 146  Q
     ||||||||||||||||    
T  5349054 tatgatttgttgcgaga 5349070  T

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Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 5356037 - 5355933
Alignment:
Q  33 atattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcat 132  Q
    ||||| ||||| |||| ||||||||| ||||||||||||| | | ||||||||||||||| |||| ||| |||||| ||  ||| || ||| ||||||||    
T  5356037 atattaaatggatgtggactttatgctgaaattggaataagtattcttgttgagcgaagccttgtaactgttgatg-ataagaataggcttagaatgcat 5355939  T
Q  133 gatttg 138  Q
    ||||||    
T  5355938 gatttg 5355933  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 5445675 - 5445734
Alignment:
Q  50 actttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatga 109  Q
    ||||| ||||||||||||||||| |||||||||||  |||||| |||||||| |||||||    
T  5445675 actttctgcagaaattggaataagtgtccttgttgctcgaagccttgtgactgttgatga 5445734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 5068496 - 5068383
Alignment:
Q  32 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 131  Q
    |||||| ||||| || | ||||| ||| ||||||||||||| | ||||||||||||||||  | || | | ||||| ||  | |||| ||||||||||||    
T  5068496 tatattaaatggatgcggactttttgctgaaattggaataagtatccttgttgagcgaagtctggttattgttgataaaaag-aacaaacttggaatgca 5068398  T
Q  132 tgatttgttgcgaga 146  Q
    |||||||||||||||    
T  5068397 tgatttgttgcgaga 5068383  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 5175436 - 5175556
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||| ||||||||||| ||||| |||| | ||| |||||||  |||||||| |||||| |||||||||||||| || ||  ||||| |||   ||||  |    
T  5175436 atgttatacatatattaaatggctgtggattttttgcagaagatggaataagtgtcctggttgagcgaagcttagtaacggttgat-aataaaaacaagc 5175534  T
Q  122 ttggaatgcatgatttgttgcg 143  Q
    ||||||||||| ||||||||||    
T  5175535 ttggaatgcataatttgttgcg 5175556  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 36215324 - 36215201
Alignment:
Q  22 atgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagac 121  Q
    |||| ||||||||||| |||||  ||||||||| ||||||||||||| ||| ||| ||||| ||||||||| |||| ||| |||||| || ||||||| |    
T  36215324 atgttatacatatattaaatggaagtgaactttttgcagaaattggagtaagtgttcttgtagagcgaagccttgtaactgttgatg-ataggaacaggc 36215226  T
Q  122 ttggaatgcatgatttgttgcgaga 146  Q
    ||||||||||||||||| |||||||    
T  36215225 ttggaatgcatgatttgctgcgaga 36215201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 22585730 - 22585630
Alignment:
Q  45 tgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcga 144  Q
    |||| |||| ||||||||||||||||||  |||||||||||| ||||| |||||| | |||||| ||  |||||| |||||||||||||||||| |||||    
T  22585730 tgtggacttcatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacaggcttggaatgcatgatttgctgcga 22585632  T
Q  145 ga 146  Q
    ||    
T  22585631 ga 22585630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 8876390 - 8876491
Alignment:
Q  39 aatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttg 138  Q
    ||||| |||||||||||| | ||||||||||||| ||| |||||||| |||||| |||| || || ||||||  |||| |  ||||||||||||||||||    
T  8876390 aatgggtgtgaactttatcctgaaattggaataagtgttcttgttgaacgaagccttgtaaccatggatgaa-aggaatatgcttggaatgcatgatttg 8876488  T
Q  139 ttg 141  Q
    |||    
T  8876489 ttg 8876491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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