View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_50 (Length: 258)
Name: NF20016_high_50
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_50 |
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| [»] scaffold1995 (1 HSPs) |
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Alignment Details
Target: scaffold1995 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 636 - 881
Alignment:
| Q |
1 |
atatgtacactgatagacaaacaaaagacggttattgtaaatattctgctagagaacaagttttaggagaagtgaaaaggttgttagagaaatttcctaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
636 |
atatgtacaccgatagacaaacaaaagacggttattgtaaatattcctcaagagaacaggttttaggggaagtgagaaggttgttagcgaaatttcctaa |
735 |
T |
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| Q |
101 |
cgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtgcgtttgatatagcggaaacagggttaaatgttagggaa |
200 |
Q |
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| T |
736 |
cgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtgcgtttgatatagcagaaacaaggttaaatgttagggaa |
835 |
T |
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| Q |
201 |
aatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
246 |
Q |
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| T |
836 |
aatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38546523 - 38546768
Alignment:
| Q |
1 |
atatgtacactgatagacaaacaaaagacggttattgtaaatattctgctagagaacaagttttaggagaagtgaaaaggttgttagagaaatttcctaa |
100 |
Q |
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|||||||||| |||||||| | |||||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
38546523 |
atatgtacaccgatagacacataaaagacggttattgtaaatattccgcaagagaacaagttttaggggaagtgagaaggttgttagcgaaatttcctaa |
38546622 |
T |
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| Q |
101 |
cgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtgcgtttgatatagcggaaacagggttaaatgttagggaa |
200 |
Q |
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| T |
38546623 |
cgaagaagttagtattacgttaacgggacatagtttaggaagtgctatggcaacattaagtgcgtttgatatagcggaaacagggttaaatgttagggaa |
38546722 |
T |
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| Q |
201 |
aatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
246 |
Q |
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| T |
38546723 |
aatggtgaaaaaattcatgtttctgttttttcattttctggaccta |
38546768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38552973 - 38553218
Alignment:
| Q |
1 |
atatgtacactgatagacaaacaaaagacggttattgtaaatattctgctagagaacaagttttaggagaagtgaaaaggttgttagagaaatttcctaa |
100 |
Q |
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|||||||||| |||||||| | |||||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
38552973 |
atatgtacaccgatagacacataaaagacggttattgtaaatattccgcaagagaacaagttttaggggaagtgagaaggttgttagcgaaatttcctaa |
38553072 |
T |
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| Q |
101 |
cgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaagtgcgtttgatatagcggaaacagggttaaatgttagggaa |
200 |
Q |
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||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
38553073 |
cgaagaagttagtattacgttaacgggacatagtttaggtagtgctatggcaacattaagtgcgtttgatatagcagaaacaaggttaaatgttagggaa |
38553172 |
T |
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| Q |
201 |
aatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
246 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38553173 |
aatggtgaaaaaattcatgtttctgttttttcattttctggaccta |
38553218 |
T |
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