View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_high_54 (Length: 251)

Name: NF20016_high_54
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_high_54
NF20016_high_54
[»] chr4 (9 HSPs)
chr4 (1-60)||(31943594-31943653)
chr4 (196-242)||(31943789-31943835)
chr4 (196-242)||(10984962-10985008)
chr4 (196-242)||(24104978-24105024)
chr4 (207-242)||(4325178-4325213)
chr4 (196-242)||(17359031-17359077)
chr4 (196-242)||(53693333-53693379)
chr4 (197-242)||(3074290-3074335)
chr4 (1-60)||(21403053-21403110)
[»] chr7 (6 HSPs)
chr7 (196-242)||(24276543-24276589)
chr7 (196-242)||(26786775-26786821)
chr7 (196-242)||(43727603-43727649)
chr7 (199-242)||(9230049-9230092)
chr7 (196-242)||(5287159-5287205)
chr7 (204-242)||(25023994-25024032)
[»] chr6 (4 HSPs)
chr6 (196-242)||(8035998-8036044)
chr6 (194-242)||(25340044-25340092)
chr6 (196-242)||(12181078-12181124)
chr6 (196-242)||(30621086-30621132)
[»] chr3 (8 HSPs)
chr3 (196-242)||(55194605-55194651)
chr3 (196-242)||(3858637-3858683)
chr3 (196-242)||(3345451-3345497)
chr3 (193-242)||(22527112-22527161)
chr3 (196-242)||(51261565-51261611)
chr3 (196-242)||(9741169-9741215)
chr3 (196-242)||(15667587-15667633)
chr3 (1-59)||(47041336-47041393)
[»] chr8 (9 HSPs)
chr8 (196-242)||(14446411-14446457)
chr8 (196-242)||(23448799-23448845)
chr8 (196-240)||(9256015-9256059)
chr8 (196-242)||(40146289-40146335)
chr8 (194-242)||(28841498-28841544)
chr8 (196-240)||(13152927-13152971)
chr8 (196-242)||(24332812-24332857)
chr8 (196-242)||(30694129-30694175)
chr8 (196-226)||(42446895-42446925)
[»] chr5 (7 HSPs)
chr5 (196-242)||(27169349-27169395)
chr5 (196-242)||(40813416-40813462)
chr5 (196-242)||(3055063-3055109)
chr5 (196-242)||(8785342-8785388)
chr5 (196-242)||(15731146-15731192)
chr5 (1-54)||(15731346-15731397)
chr5 (1-60)||(27169537-27169594)
[»] chr2 (4 HSPs)
chr2 (196-242)||(12539151-12539197)
chr2 (196-242)||(31708657-31708703)
chr2 (197-242)||(23866673-23866718)
chr2 (196-242)||(28840969-28841015)
[»] chr1 (7 HSPs)
chr1 (196-242)||(48607169-48607215)
chr1 (196-242)||(32380101-32380147)
chr1 (196-242)||(40865100-40865146)
chr1 (196-242)||(49465660-49465706)
chr1 (196-242)||(9636677-9636723)
chr1 (196-242)||(25017134-25017180)
chr1 (196-242)||(52754312-52754358)
[»] scaffold0178 (1 HSPs)
scaffold0178 (196-239)||(17319-17362)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31943594 - 31943653
Alignment:
Q  1 cattttaaaaatattatggccctctacctatacgattgcggctgtcattaaaacatatca 60  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  31943594 cattttaaaaacattatggacctctacctatacggttgcggctgtcattaaaacatatca 31943653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 31943789 - 31943835
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31943789 taatcaatttttagaataaattcttgaagtgacttaactagaataat 31943835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 10985008 - 10984962
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  10985008 taatcaatttttagaatgaattcttgaagtgacttaactagaataat 10984962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 24105024 - 24104978
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  24105024 taatcaatttttagaataaatttttgaattgacttaactagaataat 24104978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 4325178 - 4325213
Alignment:
Q  207 tagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  4325178 tagaataaattcttgaagtgacttaactagaataat 4325213  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 17359031 - 17359077
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||    
T  17359031 taatcaatttttagaataaatttttgaagcgacttaagtagaataat 17359077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 53693379 - 53693333
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  53693379 taatcaatttttagaataaattgttgaaatgatttaactagaataat 53693333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 3074290 - 3074335
Alignment:
Q  197 aatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||    
T  3074290 aatcaatttttaaaataaattgttgaagtgacttaactataataat 3074335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21403053 - 21403110
Alignment:
Q  1 cattttaaaaatattatggccctctacctatacgattgcggctgtcattaaaacatatca 60  Q
    ||||||||||| ||||||| |||||||||||  |||||||| ||||| |||||| |||||    
T  21403053 cattttaaaaacattatggtcctctacctat--gattgcggatgtcactaaaacttatca 21403110  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 24276589 - 24276543
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24276589 taatcaatttttagaataaattcttgaagtgacttaactagaataat 24276543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 26786821 - 26786775
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  26786821 taatcaatttttagaataaattgttgaagtgacttaactagaataat 26786775  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 43727603 - 43727649
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  43727603 taatcaatttttagaataaattgttgaagtgacttaactagaataat 43727649  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 9230049 - 9230092
Alignment:
Q  199 tcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  9230049 tcaatttttagaataaattgttgaagtgacttaactagaataat 9230092  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 5287159 - 5287205
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||    
T  5287159 taatcaatttttagaataatttcttgaagtggtttaactagaataat 5287205  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 25023994 - 25024032
Alignment:
Q  204 ttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  25023994 ttttagaataaattcttgaagtggcttaactagaataat 25024032  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 8036044 - 8035998
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8036044 taatcaatttttagaataaattcttgaagtgacttaactagaataat 8035998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 25340044 - 25340092
Alignment:
Q  194 tgtaatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  25340044 tgtaatcaatttttagaataaatttttgaagtggcttaactagaataat 25340092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 12181124 - 12181078
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  12181124 taatcaatttttagaataaattcttgaagtggcttaattagaataat 12181078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 30621086 - 30621132
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||    
T  30621086 taatcaatttttagaataaattgttgaagtgacttaattagaataat 30621132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 55194605 - 55194651
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  55194605 taatcaatttttagaataaattcttgaagtgacttaactagaataat 55194651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 3858683 - 3858637
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  3858683 taatcaatttttagaataaattcttaaagtgacttaactagaataat 3858637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 3345451 - 3345497
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  3345451 taatcaatttttaaaataaattcgtgaagtgacttaactagaataat 3345497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 22527112 - 22527161
Alignment:
Q  193 ctgtaatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  22527112 ctgtaatcaatatttagaataaaattttgaagtgacttaactagaataat 22527161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 51261565 - 51261611
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  51261565 taatcaattttgagaataaatttttgaagtgacttaactaaaataat 51261611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9741169 - 9741215
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||| ||||||||||||||||| || |||| ||||||||||||||||    
T  9741169 taattaatttttagaataaatttttaaagtaacttaactagaataat 9741215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 15667587 - 15667633
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||| |||||||||||||  ||||||||||||| ||||||    
T  15667587 taatcaattttaagaataaattcttatagtgacttaactaaaataat 15667633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47041336 - 47041393
Alignment:
Q  1 cattttaaaaatattatggccctctacctatacgattgcggctgtcattaaaacatatc 59  Q
    ||||||||||||||||||| ||||||||||   | ||||||||||||||||||| ||||    
T  47041336 cattttaaaaatattatggacctctaccta-cgggttgcggctgtcattaaaacttatc 47041393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 14446411 - 14446457
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  14446411 taatcaatttttagaataaattgttgaagtgacttaactagaataat 14446457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 23448799 - 23448845
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23448799 taatcaatttttagaataaatttttgaagtgacttaactagaataat 23448845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 9256015 - 9256059
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaata 240  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  9256015 taatcaatttttagaataaattgttgaagtgacttaactagaata 9256059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 40146335 - 40146289
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  40146335 taatcaacttttagaataaattcttgaagtgacttaactaaaataat 40146289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 28841498 - 28841544
Alignment:
Q  194 tgtaatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||    
T  28841498 tgtaatcaatttttagaataaattctt--aatgacttaactagaataat 28841544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 13152971 - 13152927
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaata 240  Q
    |||||||||||||||||||||| | |||||||||||| |||||||    
T  13152971 taatcaatttttagaataaattgtagaagtgacttaaatagaata 13152927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 24332812 - 24332857
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  24332812 taatcaattttta-aataaattattgaattgacttaactagaataat 24332857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 30694129 - 30694175
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| |||||||| ||||| || ||||||    
T  30694129 taatcaatttttagaataaattattgaagtggcttaagtataataat 30694175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 42446925 - 42446895
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtg 226  Q
    |||||||||||||||||||||||||||||||    
T  42446925 taatcaatttttagaataaattcttgaagtg 42446895  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 27169395 - 27169349
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  27169395 taatcaatttttaaaataaattcttgaagtgacttaactagaataat 27169349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 40813416 - 40813462
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  40813416 taatcaatttttagaataaattcttgaagtgacttaattagaataat 40813462  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 3055063 - 3055109
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  3055063 taatcaacttttagaataaattgttgaagtgacttaactagaataat 3055109  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 8785342 - 8785388
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  8785342 taatcaatttttagaatacattcttgaagtgacttaactaaaataat 8785388  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 15731192 - 15731146
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||    
T  15731192 taatcaattttttgaataaattcttaaagtgacttaacttgaataat 15731146  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15731397 - 15731346
Alignment:
Q  1 cattttaaaaatattatggccctctacctatacgattgcggctgtcattaaaac 54  Q
    ||||||||||||||||||| ||||||||  |||| |||||||||||| ||||||    
T  15731397 cattttaaaaatattatggacctctacc--tacggttgcggctgtcactaaaac 15731346  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27169594 - 27169537
Alignment:
Q  1 cattttaaaaatattatggccctctacctatacgattgcggctgtcattaaaacatatca 60  Q
    ||||||||||| ||||||| | ||||||||  ||||||||||||||| |||||| |||||    
T  27169594 cattttaaaaacattatggtcttctaccta--cgattgcggctgtcactaaaacttatca 27169537  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 12539151 - 12539197
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  12539151 taatcaatttttagaataaaatcttgaagtgacttaactagaataat 12539197  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 31708703 - 31708657
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  31708703 taataaatttttagaataaattcttgaagtgacttaactagaataat 31708657  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 23866673 - 23866718
Alignment:
Q  197 aatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  23866673 aatcaatttttagaataaattgttgaagtgacttaactagaataat 23866718  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 28840969 - 28841015
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  28840969 taatcaatttttagaataaattcttgaagtgccttaacaagaataat 28841015  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 48607215 - 48607169
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  48607215 taatcaatttttagaatatattcttgaagtgacttaactagaataat 48607169  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 32380147 - 32380101
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  32380147 taatcaatttttagaacaaatttttgaagtgacttaactagaataat 32380101  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 40865146 - 40865100
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||    
T  40865146 taatcaatttttagaataaattcttgcactgacttaactagaataat 40865100  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 49465706 - 49465660
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||    
T  49465706 taatcaatttttagaataaattgttgaagtgacttaattagaataat 49465660  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9636677 - 9636723
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  9636677 taatcaatttttaaaataaatttttggagtgacttaactagaataat 9636723  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 25017134 - 25017180
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||    
T  25017134 taataaatttttagaataaattcttgatgtgatttaactagaataat 25017180  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 52754358 - 52754312
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaataat 242  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||    
T  52754358 taatcaatttttagaataaattgtttaagtgatttaactagaataat 52754312  T

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Target: scaffold0178 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 17319 - 17362
Alignment:
Q  196 taatcaatttttagaataaattcttgaagtgacttaactagaat 239  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  17319 taatcaatgtttagaataaattcttgaagtgacttaactagaat 17362  T

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