View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_high_55 (Length: 250)

Name: NF20016_high_55
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_high_55
NF20016_high_55
[»] chr2 (1 HSPs)
chr2 (15-250)||(12689706-12689938)
[»] chr1 (3 HSPs)
chr1 (118-241)||(19749769-19749893)
chr1 (56-117)||(20963514-20963576)
chr1 (56-115)||(15157945-15158002)
[»] chr5 (3 HSPs)
chr5 (118-241)||(26863445-26863569)
chr5 (56-117)||(20679805-20679866)
chr5 (56-123)||(23421574-23421640)
[»] chr6 (2 HSPs)
chr6 (60-113)||(4282658-4282711)
chr6 (57-113)||(22622465-22622519)
[»] chr7 (1 HSPs)
chr7 (56-115)||(550543-550601)
[»] chr3 (1 HSPs)
chr3 (56-113)||(20012350-20012405)
[»] scaffold0013 (1 HSPs)
scaffold0013 (59-115)||(135652-135706)
[»] chr8 (3 HSPs)
chr8 (59-115)||(2236-2290)
chr8 (56-115)||(14673570-14673628)
chr8 (57-113)||(25548139-25548193)
[»] chr4 (1 HSPs)
chr4 (59-115)||(722943-722998)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 12689706 - 12689938
Alignment:
Q  15 aatacaaaccctaattctaattcgattattgtacttttaacaagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccc 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12689706 aatacaaaccctaattctaatttgattattgtacttttaacaagaggtaaaactaaccttgaccgtgttttctgaatcacgaatcgtgatttggaaaccc 12689805  T
Q  115 taataaacctaatcaattataccgaggtgatcatgaagttgatgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcat 214  Q
    |||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  12689806 taa---acctaatcaattataccgaggtgatcatgacgttgatgtcgcagccgcaaaccccatcactggtgatgcggccgagaaacaatatcaacgtcat 12689902  T
Q  215 ctacggaggcatcgacaaccatgtgcaccattattc 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  12689903 ctacggaggcatcgacaaccatgtgcaccattattc 12689938  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 19749769 - 19749893
Alignment:
Q  118 taaacctaatcaattataccgaggtgatcatgaagttga-tgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatct 216  Q
    ||||||||||||||||| |||||| |||||||  ||||| |||||||||||||||||| |||  |  |||||| ||| |||| |||||  ||||||||||    
T  19749769 taaacctaatcaattatgccgaggggatcatggcgttgaatgtcgcagccgcaaaccccatcgttgatgatgccgccaagaagcaatacgaacgtcatct 19749868  T
Q  217 acggaggcatcgacaaccatgtgca 241  Q
     ||||||||||||||||||||||||    
T  19749869 gcggaggcatcgacaaccatgtgca 19749893  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 20963576 - 20963514
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcac-gaatcgtgatttggaaaccctaa 117  Q
    ||||||||||| ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  20963576 aagaggtaaaattaaccttgaccacgttttctgaatcgcaaaatcttgatttggaaaccctaa 20963514  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 15158002 - 15157945
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    |||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||||    
T  15158002 aagaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaaccct 15157945  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 26863569 - 26863445
Alignment:
Q  118 taaacctaatcaattataccgaggtgatcatgaagttga-tgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatct 216  Q
    ||||||||||||||||| |||||| |||||||  ||||| ||||||||| |||||||| |||  |  |||||| ||| |||| |||||  ||||||||||    
T  26863569 taaacctaatcaattatgccgaggggatcatggcgttgaatgtcgcagctgcaaaccccatcgttgatgatgccgccaagaagcaatacgaacgtcatct 26863470  T
Q  217 acggaggcatcgacaaccatgtgca 241  Q
    | |||||||||||||||||||||||    
T  26863469 atggaggcatcgacaaccatgtgca 26863445  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 20679866 - 20679805
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaa 117  Q
    ||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||    
T  20679866 aagaggtaaaactaaccttgaccacattttctgaatctcaaatcgtgacttggaaaccctaa 20679805  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 23421574 - 23421640
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaataaacc 123  Q
    |||||||||||| |||||||||| ||||| ||||||| | |||| ||||||||||||||||| |||||    
T  23421574 aagaggtaaaacaaaccttgaccacgttt-ctgaatcgcaaatcatgatttggaaaccctaagaaacc 23421640  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 4282711 - 4282658
Alignment:
Q  60 ggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  4282711 ggtaaaactaaccttgaccacgttttctggatcacaaatcgtgatttggaaacc 4282658  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 22622519 - 22622465
Alignment:
Q  57 agaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  22622519 agaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 22622465  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 550601 - 550543
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    |||| |||||||||||||||||| || |||||||||| | |||||||||| |||||||||    
T  550601 aagacgtaaaactaaccttgaccacg-tttctgaatcgcaaatcgtgattcggaaaccct 550543  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 20012405 - 20012350
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    |||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  20012405 aagaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 20012350  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 135706 - 135652
Alignment:
Q  59 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  135706 aggtaaaactaacctcgaccacgttt-ctgaatcaa-aatcgtgatttggaaaccct 135652  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 2290 - 2236
Alignment:
Q  59 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  2290 aggtaaaactaacctcgaccacgttt-ctgaatcaa-aatcgtgatttggaaaccct 2236  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 14673570 - 14673628
Alignment:
Q  56 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatc-gtgatttggaaaccct 115  Q
    |||||||||||||||||| |||| || ||||||||||| ||||| ||||||||||||||||    
T  14673570 aagaggtaaaactaacctcgaccacg-tttctgaatca-gaatctgtgatttggaaaccct 14673628  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 25548139 - 25548193
Alignment:
Q  57 agaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 113  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  25548139 agaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 25548193  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 722943 - 722998
Alignment:
Q  59 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 115  Q
    |||||||||||||||||||| || |||| ||||||| |||||||||| | |||||||    
T  722943 aggtaaaactaaccttgaccacg-tttccgaatcacaaatcgtgattcgtaaaccct 722998  T

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