View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_58 (Length: 247)
Name: NF20016_high_58
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 5479307 - 5479092
Alignment:
| Q |
12 |
aacctgtgttgaaccattgtcaatgtagcctttgtacacatggccgaatcctccaactccgacgatgaagagttcatcgaagttgtttgtggcggcacgg |
111 |
Q |
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| T |
5479307 |
aacctgtgttgaaccattgtcaatgtagcctttgtacacatggccgaatcctccaactccgacaatgaagagttcgtcgaagttgtttgtggcagcacga |
5479208 |
T |
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| Q |
112 |
atctctaggagggagaagctccggcagagatccgacggtagagatgagtttgaatgtgttgattttgttgttgttgcaaatgacaatggaccccattttg |
211 |
Q |
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| T |
5479207 |
atctctagaagggagaagctccggcagagatccgatggtagagatgtgtttgaatttgttgattttgttgttgttgcaaatgacaatggaccccactttg |
5479108 |
T |
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| Q |
212 |
aagttgtcgaagactt |
227 |
Q |
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| T |
5479107 |
aagtcgtcgaagactt |
5479092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 4712747 - 4712671
Alignment:
| Q |
31 |
tcaatgtagcctttgtacacatggccgaatcctccaactccgacgatgaagagttcatcgaagttgtttgtggcggc |
107 |
Q |
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| T |
4712747 |
tcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggc |
4712671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 4652964 - 4653028
Alignment:
| Q |
40 |
cctttgtacacatggccgaatcctccaactccgacgatgaagagttcatcgaagttgtttgtggc |
104 |
Q |
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| T |
4652964 |
cctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggc |
4653028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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