View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_high_59 (Length: 246)
Name: NF20016_high_59
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 32002261 - 32002093
Alignment:
| Q |
58 |
gtagaggacctaatcgactatgtatgattcnnnnnnnnaagtttaaggagtctttaatttgatctagttttaataactctctgatagagtttattagcaa |
157 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32002261 |
gtagagaacctaatcgactatgtatgattcttttttt-aagtttaaggagtctttaatttgatctagttttaataactctctgatagagtttattagcaa |
32002163 |
T |
|
| Q |
158 |
gaaatgtcaatataattattgatatgtaacatgttaattagtaaggataatgcactccatcctatatata |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32002162 |
gaaatgtcaatataattattgatatgtaacatgttaattagtatggataatgcactccatcctatatata |
32002093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 31943264 - 31943133
Alignment:
| Q |
96 |
aagtttaaggagtctttaatttgatctagttttaataactctctgatagagtttattagcaagaaatgtcaatataattattgatatgtaacatgttaat |
195 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31943264 |
aagtttaaggtgtctttaatttgatcttgttttaataactctctgatagagtttattagcaagaaatgtcaatataattattgatatgtaacatgttaat |
31943165 |
T |
|
| Q |
196 |
tagtaaggataatgcactccatcctatatata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31943164 |
tagtaaggataatgcactccatcctatatata |
31943133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32002837 - 32002773
Alignment:
| Q |
1 |
tgggttgtgacctttttatttctatannnnnnn-aaaaagccacatttcttttataaagtagagg |
64 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32002837 |
tgggttgtgacctttttatttctattttttttttaaaaagccacatttcttttataaagtagagg |
32002773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University