View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_6 (Length: 509)
Name: NF20016_high_6
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 4082978 - 4082566
Alignment:
| Q |
10 |
aagaaaggaacttattattaaatctggcctcatttctagcaaaccatatagattgataatcatttctttgtcgatcgaattggaagaaacgggggactag |
109 |
Q |
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| T |
4082978 |
aagaaaggaacttattattaaatttggcctcatttctagcaaaccatatagattgataatcatttctttgtcgatcgaattggaagaaacgggggactag |
4082879 |
T |
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| Q |
110 |
aaattctctgtgaaactcgataaattgttccctgttaaactattctttattgctatctaagatcctatcaatggtaattggagactcgcttccttctact |
209 |
Q |
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| T |
4082878 |
aaattctctgtgaaactcaataaattgttccctgttaaactattctttattgctatctaagatcctatcaatggtaattggagactcgcttccttctacg |
4082779 |
T |
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| Q |
210 |
gctacacggatttaggaagacgccaagaatcttagcatcttctccattaactaagcagcaagttcaaatttaataatgccggcttttagaacctggtctt |
309 |
Q |
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| T |
4082778 |
gctacacggatttaggaagacgccaagaatcttagcatcttctccattaactaagcagcaatttcaaatttaataatgccggcttttagaacctggtctt |
4082679 |
T |
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| Q |
310 |
atcgagcttgagaagactaattaggatcattatccttcctctaatatcattacaaagctgcaatattgtgttgacgacttgattgcctggagtcgaattt |
409 |
Q |
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| T |
4082678 |
atcgagcttgagaagactaattaggatcattatccttcctctaatatcattacaaagctgcaatattgtgttgacgacttgattgcttggagtcgaattt |
4082579 |
T |
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| Q |
410 |
cttccctaaattt |
422 |
Q |
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| T |
4082578 |
cttccctaaattt |
4082566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 423 - 491
Target Start/End: Complemental strand, 4082582 - 4082512
Alignment:
| Q |
423 |
atttcttccctaaatttccgaccacgcatcaactagca--gcgttcccataattgacgattttataaacaa |
491 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||| |
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| T |
4082582 |
atttcttccctaaatttccgaccgcgcatcaactagcagcgcgttcccaaaattgacgattttagaaacaa |
4082512 |
T |
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