View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_62 (Length: 240)
Name: NF20016_high_62
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 10215405 - 10215595
Alignment:
| Q |
36 |
actttagatgaatcaaatccttggcacttattttttatattatttagaagtaaaagactaaataacacataaatctttagttgtagacttgtagagcatc |
135 |
Q |
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| T |
10215405 |
actttagatgaatcaaatccttggcacttattttttatattatttagaagtaaaagactaaataacacataaatctttagttgtagacttgtagagcatc |
10215504 |
T |
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| Q |
136 |
atcatcttttctttctttcaatattttgagtagaaactctcctcaggtgagtttttcttgtcctcaacattttattaccccaccatatattt |
227 |
Q |
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| T |
10215505 |
atcatcttttctttctttcaatattttgagtagaaattctcctcaggtgag-ttttcttgtcctcaacattttattatcccaccatatattt |
10215595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 10099175 - 10099111
Alignment:
| Q |
135 |
catcatcttttctttctttcaatattttgagtagaaactctcctcaggt--gagtttttcttgtcct |
199 |
Q |
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|||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
10099175 |
catcatcttttcgttcttctaatatt--gagtagaaactctcctcaggtgagagtttttcttgtcct |
10099111 |
T |
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