View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_high_77 (Length: 202)
Name: NF20016_high_77
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_high_77 |
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| [»] scaffold0864 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 22604983 - 22604809
Alignment:
| Q |
15 |
atatattaaccattatagatctatactttctannnnnnnnnnaccattaatatctgtgaactcagtctcagttcttacaacatccgaacttcgttgtaca |
114 |
Q |
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| T |
22604983 |
atatattcaccattatagatctttactttctaaattttttttaccattaatatctgagaactcagtctcaattcttccaacatttgaacttcgttgcact |
22604884 |
T |
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| Q |
115 |
ataatattaaaagagnnnnnnntatcaactattgcaatagaagaaacattaaactcttacaatagagatagtgat |
189 |
Q |
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| T |
22604883 |
aggatattaaaagagaaaaaaatatcaactattgcaatagaagtaacattaaactcttacaatagagatagtgat |
22604809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 1377 - 1249
Alignment:
| Q |
58 |
ccattaatatctgtgaactcagtctcagttcttacaacatccgaacttcgttgtacaataatattaaaagagnnnnnnntatcaactattgcaatagaag |
157 |
Q |
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| T |
1377 |
ccattaatatctgagaactcggtctcagttcttacaatatataaactttgtttcactacaatattaaaagacagaaaaatttaaacttttgcaatagaag |
1278 |
T |
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| Q |
158 |
aaacattaaactcttacaatagagatagt |
186 |
Q |
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| T |
1277 |
taacaataaattcttacaatggagatagt |
1249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 240552 - 240604
Alignment:
| Q |
57 |
accattaatatctgtgaactcagtctcagttcttacaacatccgaacttcgtt |
109 |
Q |
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| T |
240552 |
accattaatatctgagaactcggtcctagttcttacaacatctaaacttcgtt |
240604 |
T |
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