View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_low_1 (Length: 680)

Name: NF20016_low_1
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_low_1
NF20016_low_1
[»] chr1 (16 HSPs)
chr1 (540-655)||(43358516-43358631)
chr1 (540-660)||(28598074-28598194)
chr1 (545-660)||(10186895-10187010)
chr1 (540-626)||(44524371-44524457)
chr1 (543-660)||(16050974-16051091)
chr1 (540-660)||(13654100-13654220)
chr1 (563-655)||(19310613-19310705)
chr1 (540-660)||(28574062-28574182)
chr1 (540-636)||(29681356-29681451)
chr1 (540-636)||(48366395-48366490)
chr1 (576-626)||(21432019-21432069)
chr1 (540-624)||(35624782-35624866)
chr1 (543-638)||(1187595-1187691)
chr1 (540-655)||(3465244-3465353)
chr1 (149-202)||(47065085-47065138)
chr1 (158-202)||(47065837-47065881)
[»] chr4 (15 HSPs)
chr4 (540-638)||(3415493-3415591)
chr4 (540-660)||(18716251-18716371)
chr4 (540-629)||(34128566-34128655)
chr4 (540-655)||(3425024-3425139)
chr4 (540-626)||(18736924-18737010)
chr4 (534-626)||(30020203-30020295)
chr4 (540-660)||(35095793-35095913)
chr4 (540-655)||(18670606-18670721)
chr4 (545-660)||(32429603-32429718)
chr4 (540-638)||(34279832-34279931)
chr4 (578-655)||(47071212-47071289)
chr4 (540-622)||(14646625-14646707)
chr4 (540-613)||(35090680-35090753)
chr4 (133-201)||(37078940-37079008)
chr4 (161-202)||(30666554-30666595)
[»] chr2 (10 HSPs)
chr2 (540-638)||(716126-716224)
chr2 (540-660)||(17720845-17720965)
chr2 (540-660)||(14917701-14917821)
chr2 (554-638)||(16284215-16284299)
chr2 (540-660)||(39196191-39196311)
chr2 (540-660)||(45120151-45120271)
chr2 (545-622)||(42779953-42780030)
chr2 (205-284)||(29393063-29393142)
chr2 (149-202)||(817075-817128)
chr2 (540-598)||(30283811-30283868)
[»] chr6 (13 HSPs)
chr6 (534-636)||(24509462-24509564)
chr6 (540-636)||(24509171-24509267)
chr6 (539-660)||(21275537-21275658)
chr6 (545-626)||(21937340-21937421)
chr6 (533-660)||(2887252-2887379)
chr6 (540-636)||(20752461-20752556)
chr6 (540-629)||(21937030-21937119)
chr6 (533-660)||(2888974-2889101)
chr6 (550-660)||(12909404-12909514)
chr6 (149-202)||(20592056-20592109)
chr6 (550-638)||(12934511-12934599)
chr6 (149-202)||(19314507-19314560)
chr6 (561-626)||(26910704-26910769)
[»] chr5 (11 HSPs)
chr5 (540-655)||(43378202-43378317)
chr5 (540-660)||(39908723-39908843)
chr5 (540-660)||(9872743-9872863)
chr5 (540-660)||(9877858-9877978)
chr5 (547-626)||(2022735-2022814)
chr5 (540-660)||(35369221-35369341)
chr5 (538-660)||(39903608-39903730)
chr5 (136-201)||(4446332-4446397)
chr5 (540-638)||(13556646-13556744)
chr5 (540-626)||(25183859-25183945)
chr5 (149-202)||(22160471-22160524)
[»] chr3 (19 HSPs)
chr3 (540-661)||(33702918-33703039)
chr3 (540-660)||(5458331-5458451)
chr3 (540-660)||(5481807-5481927)
chr3 (540-660)||(8458076-8458196)
chr3 (540-660)||(8464515-8464635)
chr3 (540-660)||(10591614-10591734)
chr3 (540-660)||(31076721-31076841)
chr3 (540-655)||(1302569-1302684)
chr3 (540-660)||(4049572-4049692)
chr3 (540-660)||(4054706-4054826)
chr3 (540-660)||(6858374-6858494)
chr3 (540-660)||(10586501-10586621)
chr3 (540-660)||(10673257-10673377)
chr3 (540-660)||(10678372-10678492)
chr3 (540-660)||(31081826-31081946)
chr3 (540-626)||(29827193-29827279)
chr3 (543-660)||(33703068-33703185)
chr3 (540-660)||(6853271-6853391)
chr3 (550-638)||(20890836-20890924)
[»] scaffold0391 (2 HSPs)
scaffold0391 (540-660)||(16372-16492)
scaffold0391 (540-632)||(16277-16369)
[»] chr8 (14 HSPs)
chr8 (540-660)||(26982195-26982315)
chr8 (543-638)||(18608969-18609064)
chr8 (133-201)||(8472618-8472686)
chr8 (540-660)||(34107994-34108114)
chr8 (540-660)||(14315230-14315350)
chr8 (540-660)||(14318934-14319054)
chr8 (546-636)||(10341299-10341389)
chr8 (540-638)||(25953500-25953598)
chr8 (540-660)||(26987308-26987428)
chr8 (134-201)||(32593464-32593531)
chr8 (539-660)||(18884828-18884949)
chr8 (137-201)||(541761-541825)
chr8 (548-660)||(43957168-43957280)
chr8 (161-201)||(20075586-20075626)
[»] chr7 (15 HSPs)
chr7 (540-660)||(12856554-12856674)
chr7 (540-660)||(14610129-14610249)
chr7 (540-660)||(26050786-26050906)
chr7 (540-660)||(26060145-26060265)
chr7 (540-638)||(11056390-11056488)
chr7 (133-201)||(1012240-1012308)
chr7 (540-660)||(14615195-14615315)
chr7 (540-660)||(26055899-26056019)
chr7 (540-660)||(26065258-26065378)
chr7 (540-655)||(12851439-12851554)
chr7 (540-625)||(37460194-37460279)
chr7 (540-626)||(35352644-35352730)
chr7 (540-636)||(5436874-5436969)
chr7 (540-623)||(4181737-4181820)
chr7 (133-201)||(321888-321954)
[»] scaffold0006 (1 HSPs)
scaffold0006 (540-660)||(143861-143981)
[»] scaffold0756 (1 HSPs)
scaffold0756 (540-638)||(3910-4008)
[»] scaffold0005 (1 HSPs)
scaffold0005 (540-622)||(170583-170665)
[»] scaffold0223 (1 HSPs)
scaffold0223 (540-660)||(7296-7416)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 540 - 655
Target Start/End: Original strand, 43358516 - 43358631
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||||  | ||||||||     
T  43358516 tgttgtatatcttgattgttgggaagatgctgttgcacttgaaacctgaaaagtttaatgattatgcatgtaaaactcaaagcgcatgaggttgccacac 43358615  T
Q  640 taatatataggttcga 655  Q
    ||| || |||||||||    
T  43358616 taacatttaggttcga 43358631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 28598074 - 28598194
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  28598074 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 28598173  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  28598174 taacctttaggttcgattcgc 28598194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 545 - 660
Target Start/End: Complemental strand, 10187010 - 10186895
Alignment:
Q  545 tatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaata 644  Q
    ||||||||||||  || ||||| ||||||| |||||||||||||||||||||||  |||| |||||||| |||||||||||| || |||||||| |||      
T  10187010 tatatcttgatttttgagaagatgctgttgcacttgaaacctgaaaagtttaatgattatacatgtaaaactcaaagcgcatggggttgccacactaacc 10186911  T
Q  645 tataggttcgagtcgc 660  Q
    | ||||||||| ||||    
T  10186910 tttaggttcgattcgc 10186895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 540 - 626
Target Start/End: Complemental strand, 44524457 - 44524371
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    |||| ||||||||||||| |||||||| |||| || |||||||||||||||||| |||| |||||||||| ||| ||||||||||||    
T  44524457 tgttgtatatcttgattgttgggaagatgctgctgcacttgaaacctgaaaagtgtaatggttatgcatgcaaaactcaaagcgcat 44524371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 660
Target Start/End: Original strand, 16050974 - 16051091
Alignment:
Q  543 tatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaa 642  Q
    |||||| |||||||| |||||||| |||| || |||||||||||||||| |||||| |||||||||||||| |||| ||||||  || |||||||| |||    
T  16050974 tatataacttgattgttgggaagatgctgctgcacttgaaacctgaaaaatttaatggttatgcatgtaaaactcagagcgcacggggttgccacactaa 16051073  T
Q  643 tatataggttcgagtcgc 660  Q
      | ||||||||| ||||    
T  16051074 cctttaggttcgattcgc 16051091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 13654100 - 13654220
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    ||||| |||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  ||| |||||||||  ||||||||||| || ||||||||     
T  13654100 tgttagatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgcttacgcatgtaaaattcaaagcgcatggggttgccacac 13654199  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  13654200 taacctttaggttcgattcgc 13654220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 563 - 655
Target Start/End: Original strand, 19310613 - 19310705
Alignment:
Q  563 aagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaatatataggttcga 655  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||| || |||| ||| |||  | |||||||||    
T  19310613 aagaggctgttgtacttgaaacctgaaaagtttaatggttatgcatgtgaaactcaaagcgcatggggttgcaacactaacctttaggttcga 19310705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 28574062 - 28574182
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| || |||||| || || ||||||||     
T  28574062 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaacttaaagcgtatggggttgccacac 28574161  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  28574162 taacctttaggttcgattcgc 28574182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 636
Target Start/End: Original strand, 29681356 - 29681451
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgcca 636  Q
    |||| ||||||||||| | |||||||| ||||||| |||||||||||||||| | |||| |||||||||||||| |||||||||||| || ||||||    
T  29681356 tgttgtatatcttgatcgttgggaagatgctgttgcacttgaaacctgaaaaatctaatggttatgcatgtaaa-ctcaaagcgcatggggttgcca 29681451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 636
Target Start/End: Complemental strand, 48366490 - 48366395
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgcca 636  Q
    |||| ||||||||||| | |||||||| | ||||| |||||||||||||||| | |||| |||||||||||||| |||||||||||| || ||||||    
T  48366490 tgttgtatatcttgatcgttgggaagatgttgttgcacttgaaacctgaaaaatctaatggttatgcatgtaaa-ctcaaagcgcatggggttgcca 48366395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 626
Target Start/End: Complemental strand, 21432069 - 21432019
Alignment:
Q  576 acttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  21432069 acttgaaacctgaaaagtttaatggttatgcatgtaaaactcaaatcgcat 21432019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 624
Target Start/End: Original strand, 35624782 - 35624866
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgc 624  Q
    |||| ||||| ||||||| | |||||| |||  || ||||||||| |||||| |||||| |||||||||||||| ||||||||||    
T  35624782 tgttgtatattttgattgttcggaagatgctactgcacttgaaacatgaaaaatttaatggttatgcatgtaaaactcaaagcgc 35624866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 638
Target Start/End: Original strand, 1187595 - 1187691
Alignment:
Q  543 tatatatcttgattgctgggaagaggctgttgaacttgaaacct-gaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||| ||| |||| ||| || || ||| || ||||||||||| ||||| |||||| |||||||||||||| ||||||| |||| || ||||||||    
T  1187595 tatataactttattgttggaaatagactgctgcacttgaaacctagaaaaatttaatagttatgcatgtaaaactcaaagtgcatggggttgccaca 1187691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 655
Target Start/End: Original strand, 3465244 - 3465353
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||  ||| |||||||||||      ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  3465244 tgttatatatcttatttgttgggaagaggc------acttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 3465337  T
Q  640 taatatataggttcga 655  Q
    |||  | |||||||||    
T  3465338 taacctttaggttcga 3465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 47065085 - 47065138
Alignment:
Q  149 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||||| |||| ||||||| | || |||| ||||||||||||||||||||||||    
T  47065085 acacccttcctcaagctggggtatacatgtcatatgcaccaagcttgttacaaa 47065138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 47065881 - 47065837
Alignment:
Q  158 ctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||    
T  47065881 ctgaagctagagcatacatgtcatatgcaccaagtttgttacaaa 47065837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 540 - 638
Target Start/End: Complemental strand, 3415591 - 3415493
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||| ||||||||||||| |||||||| | ||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||    
T  3415591 tgttgtatatcttgattgttgggaagatgttgttgcacttgaaacctgaaaagtttaattatcatgcatgtaaaactcaaagcgcatgggattgccaca 3415493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 18716251 - 18716371
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||| ||||||||||||| |||||||| |||| || ||||||||||||||||||||||| || ||||||||||| |||||||||||| || ||||||||     
T  18716251 tgttgtatatcttgattgttgggaagatgctgctgcacttgaaacctgaaaagtttaatggtaatgcatgtaaaactcaaagcgcatggggttgccacac 18716350  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  18716351 taacctttaggttcgattcgc 18716371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 540 - 629
Target Start/End: Complemental strand, 34128655 - 34128566
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcatagg 629  Q
    |||||||||||||||||| ||||||||| ||| || ||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||    
T  34128655 tgttatatatcttgattgttgggaagagactgctgcacttgaaaccttaaaagtttaatggttatgcatgtaaaactcaaagtgcatagg 34128566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 540 - 655
Target Start/End: Complemental strand, 3425139 - 3425024
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||| ||||||||||||| ||||||||   ||||| |||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||| ||||     
T  3425139 tgttgtatatcttgattgttgggaagattgtgttgcacttgaaacctgaaaagtttaattattatgcatgcaaaactcaaagcgcatgggattgtcacac 3425040  T
Q  640 taatatataggttcga 655  Q
    |||  | |||||||||    
T  3425039 taacctttaggttcga 3425024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 626
Target Start/End: Original strand, 18736924 - 18737010
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    |||| ||||||||||||| |||||||| |||| || ||||||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  18736924 tgttgtatatcttgattgttgggaagatgctgctgcacttgaaacttgaaaagtttaatggttatgcatgtaaaactcaaagcgcat 18737010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 534 - 626
Target Start/End: Complemental strand, 30020295 - 30020203
Alignment:
Q  534 aaatactgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    ||||| |||| | ||||||||||| || ||||| ||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  30020295 aaatattgttgtctatcttgattgttgagaagatgctgttgcacttgaaacctgaaaagttcaatggttatgcatgtaaaactcaaagcgcat 30020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 35095793 - 35095913
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  35095793 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 35095892  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  35095893 taacctttaggttcgattcgc 35095913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 540 - 655
Target Start/End: Original strand, 18670606 - 18670721
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||| ||||||||||||| |||||||  |||| || ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |  ||||||||     
T  18670606 tgttgtatatcttgattgttgggaagttgctgctgcacttgaaacctgaaaagtttaatggttatgcatgtaaaattcaaagcgcatggagttgccacac 18670705  T
Q  640 taatatataggttcga 655  Q
    |||  | |||||||||    
T  18670706 taacctttaggttcga 18670721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 545 - 660
Target Start/End: Complemental strand, 32429718 - 32429603
Alignment:
Q  545 tatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaata 644  Q
    ||||||||||||| |||||||| |  | || |||||||||||||||| |||||| |||||||||||||| |||||||||||| || |||||||| |||      
T  32429718 tatatcttgattgttgggaagatgtggctgcacttgaaacctgaaaattttaatggttatgcatgtaaaactcaaagcgcatggggttgccacactaacc 32429619  T
Q  645 tataggttcgagtcgc 660  Q
    | ||||||||| ||||    
T  32429618 tttaggttcgattcgc 32429603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 638
Target Start/End: Complemental strand, 34279931 - 34279832
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagttt-aattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||||||||||| |||  |||||||||| | || ||||||||||||||| |||| ||| |||||||||||||| |||||||||||| |||||| ||||    
T  34279931 tgttatatatcttgtttgtagggaagaggcggctgcacttgaaacctgaaacgttttaatggttatgcatgtaaaactcaaagcgcatgggattgtcaca 34279832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 578 - 655
Target Start/End: Original strand, 47071212 - 47071289
Alignment:
Q  578 ttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaatatataggttcga 655  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||| |||  | |||||||||    
T  47071212 ttgaaacctgaaaagtttaatggttatgcatgtaaaactcaaagcgcatggggttgccacactaacctttaggttcga 47071289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 622
Target Start/End: Complemental strand, 14646707 - 14646625
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagc 622  Q
    |||||||||||||||||| | ||| || |||| || |||||||| |||||||||||||| |||||||||||||| || |||||    
T  14646707 tgttatatatcttgattgttaggatgaagctgctgcacttgaaatctgaaaagtttaatggttatgcatgtaaaacttaaagc 14646625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 613
Target Start/End: Original strand, 35090680 - 35090753
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaa 613  Q
    ||||||| |||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | |||||||||||    
T  35090680 tgttataaatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaa 35090753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 37079008 - 37078940
Alignment:
Q  133 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    |||||||| || ||| ||||||||||| |||||| ||||| ||||||||||  ||||||||||||||||    
T  37079008 aagattcttaactttaacacccctcctcaagctgtagcatacatgacatataaaccaagcttgttacaa 37078940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 30666595 - 30666554
Alignment:
Q  161 aagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  30666595 aagctggagcatgcatgttatatgcaccaagcttgttacaaa 30666554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 540 - 638
Target Start/End: Original strand, 716126 - 716224
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||| ||||||||||||| |||||||| | ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||    
T  716126 tgttgtatatcttgattgttgggaagatgttgttgcacttgaaacctgaaaagtttaatggttatgcatgtaaaactcaaagcgcatggggttgccaca 716224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 17720965 - 17720845
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || |||||||||    
T  17720965 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacat 17720866  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  17720865 taacctttaggttcgattcgc 17720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 14917821 - 14917701
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  14917821 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 14917722  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  14917721 taacctttaggttcgattcgc 14917701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 554 - 638
Target Start/End: Original strand, 16284215 - 16284299
Alignment:
Q  554 attgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||| |||||||| |||| || |||||||||||||||||||||||  ||||||||||||| |||||||||||| || ||||||||    
T  16284215 attgttgggaagatgctgctgcacttgaaacctgaaaagtttaatgattatgcatgtaaaactcaaagcgcatggggttgccaca 16284299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 39196311 - 39196191
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| |||||||||| || || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  39196311 tgttatatatcttgtttgttgggaagaggatgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 39196212  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  39196211 taacctttaggttcgattcgc 39196191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 45120151 - 45120271
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||| ||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  45120151 tgttatatatattgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 45120250  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  45120251 taacctttaggttcgactcgc 45120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 545 - 622
Target Start/End: Original strand, 42779953 - 42780030
Alignment:
Q  545 tatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagc 622  Q
    ||||||||| ||| |||||||| |||| || |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  42779953 tatatcttgtttgttgggaagatgctgctgcacttgaaacctgaaaagtttaatgattatgcatgtaaaactcaaagc 42780030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 29393063 - 29393142
Alignment:
Q  205 tggccctgattttcgatcactttagcaattttctcagcaacaccgaaaccatcacctcgatgaagtgagttatcagtccc 284  Q
    ||||| |||||||||||||||| |||||||| ||||||| | || |||| |||| ||||||||| ||||  |||||||||    
T  29393063 tggccgtgattttcgatcacttcagcaatttgctcagcatcgcccaaactatcaactcgatgaactgagacatcagtccc 29393142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 817075 - 817128
Alignment:
Q  149 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||| |||||| |||||| ||||| |||| ||||||||||||||||||||||||    
T  817075 acactcctcctcaagctgaagcatacatgtcatatgcaccaagcttgttacaaa 817128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 598
Target Start/End: Complemental strand, 30283868 - 30283811
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaat 598  Q
    |||||||||||||| ||| |||||||| |||| || ||||||||||||||| |||||||    
T  30283868 tgttatatatcttgtttgttgggaaga-gctgctgcacttgaaacctgaaatgtttaat 30283811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 636
Target Start/End: Original strand, 24509462 - 24509564
Alignment:
Q  534 aaatactgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattg 633  Q
    ||||| |||| ||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| ||||| || |||    
T  24509462 aaatattgttgtatatcttgattgttgggaagaggttgttgcacttgaaaccttaaaagtttaatggttatgcatgtaaaactcaaatcgcatggggttg 24509561  T
Q  634 cca 636  Q
    |||    
T  24509562 cca 24509564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 636
Target Start/End: Complemental strand, 24509267 - 24509171
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgcca 636  Q
    |||||||||||||||||| ||||||||||||| || ||||||||| | ||||||||||| |||||||||||||| |||||| ||||| || ||||||    
T  24509267 tgttatatatcttgattgttgggaagaggctgctgcacttgaaacttcaaaagtttaatggttatgcatgtaaaactcaaaacgcatggggttgcca 24509171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 21275537 - 21275658
Alignment:
Q  539 ctgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||    
T  21275537 ctgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 21275636  T
Q  639 ttaatatataggttcgagtcgc 660  Q
     |||  | ||||||||| ||||    
T  21275637 ctaacctttaggttcgattcgc 21275658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 626
Target Start/End: Original strand, 21937340 - 21937421
Alignment:
Q  545 tatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| || |||||| |||| ||||||||||||    
T  21937340 tatatcttgattgttgggaagagactgttgcacttgaaacctgaaaagtttaatggtaatgcatataaaactcaaagcgcat 21937421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 660
Target Start/End: Original strand, 2887252 - 2887379
Alignment:
Q  533 taaatactgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggatt 632  Q
    |||||| |||| ||||||||||||| ||  |||| | || || ||||||||||||||||||||||| |||||| ||||||| |||||||||||| || ||    
T  2887252 taaatattgttgtatatcttgattgttgaaaagaagttgctgcacttgaaacctgaaaagtttaatggttatgtatgtaaaactcaaagcgcatggggtt 2887351  T
Q  633 gccacattaatatataggttcgagtcgc 660  Q
    | |||| ||| || ||||||||| ||||    
T  2887352 gtcacactaacatttaggttcgattcgc 2887379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 636
Target Start/End: Complemental strand, 20752556 - 20752461
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgcca 636  Q
    |||||||||||||| ||| ||||| |||||||||| ||||||||||||||| |||||||  ||||||||||||| |||||||| ||| || ||||||    
T  20752556 tgttatatatcttgtttgttggga-gaggctgttgcacttgaaacctgaaatgtttaatgattatgcatgtaaaactcaaagcacatggggttgcca 20752461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 540 - 629
Target Start/End: Complemental strand, 21937119 - 21937030
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcatagg 629  Q
    |||| ||||||||||||| |||||| ||| || || |||||||||  |||||||||||| |||||||||||||| ||||||| |||||||    
T  21937119 tgttttatatcttgattgttgggaacaggttgctgcacttgaaactcgaaaagtttaatggttatgcatgtaaaactcaaagtgcatagg 21937030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 533 - 660
Target Start/End: Original strand, 2888974 - 2889101
Alignment:
Q  533 taaatactgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggatt 632  Q
    |||||| |||| ||||||||||||| ||  |||| | || || |||||||| ||| |||||||||| |||||| ||||||| |||||||||||| || ||    
T  2888974 taaatattgttgtatatcttgattgttgaaaagaagttgctgcacttgaaatctggaaagtttaatggttatgaatgtaaaactcaaagcgcatggggtt 2889073  T
Q  633 gccacattaatatataggttcgagtcgc 660  Q
    | |||| ||| || ||||||||| ||||    
T  2889074 gtcacactaacatttaggttcgattcgc 2889101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 660
Target Start/End: Original strand, 12909404 - 12909514
Alignment:
Q  550 cttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaatatatag 649  Q
    |||||||| ||||||||||| | || |||| |||||||||||  ||||| ||||||||||||||  ||||||||||| || |||||||| |||  | |||    
T  12909404 cttgattgttgggaagaggcggctgcacttaaaacctgaaaaaattaatcgttatgcatgtaaacttcaaagcgcatggggttgccacactaacctttag 12909503  T
Q  650 gttcgagtcgc 660  Q
    |||||| ||||    
T  12909504 gttcgattcgc 12909514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 20592056 - 20592109
Alignment:
Q  149 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  20592056 acactcctcctcaagctggagcatacatgtcatatgcaccaagcttgttacaaa 20592109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 638
Target Start/End: Original strand, 12934511 - 12934599
Alignment:
Q  550 cttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||||| ||||||||||| | || |||| |||||||||||  |||||  |||||||||||||  ||||||||||| || ||||||||    
T  12934511 cttgattgttgggaagaggcggctgcacttaaaacctgaaaaaattaatcattatgcatgtaaacttcaaagcgcatggggttgccaca 12934599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 19314560 - 19314507
Alignment:
Q  149 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||| |||||| |||||||||||| | || |||||||||||||||||| |||||    
T  19314560 acactcctcctcaagctggagcatacttgtcatatgcaccaagcttgtaacaaa 19314507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 26910769 - 26910704
Alignment:
Q  561 ggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    |||||||| ||||| ||||||||||||||||| ||||   |||||||||||||  |||||| ||||    
T  26910769 ggaagaggttgttgcacttgaaacctgaaaagattaaggattatgcatgtaaaattcaaagtgcat 26910704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 540 - 655
Target Start/End: Original strand, 43378202 - 43378317
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||| ||||||||||||| |||||||| | || || ||||||||| ||||||||||||| |||||||||||||| |||||||||||| || ||| ||||     
T  43378202 tgttgtatatcttgattgttgggaagaagttgctgcacttgaaacttgaaaagtttaatggttatgcatgtaaaactcaaagcgcatggggttgtcacac 43378301  T
Q  640 taatatataggttcga 655  Q
    ||| || |||||||||    
T  43378302 taacatttaggttcga 43378317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 39908723 - 39908843
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  39908723 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 39908822  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  39908823 taacctttaggttcgattcgc 39908843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 9872863 - 9872743
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||| | || || ||||||||     
T  9872863 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagtgtatggggttgccacac 9872764  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  9872763 taacctttaggttcgattcgc 9872743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 9877978 - 9877858
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||| | || || ||||||||     
T  9877978 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagtgtatggggttgccacac 9877879  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  9877878 taacctttaggttcgattcgc 9877858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 626
Target Start/End: Original strand, 2022735 - 2022814
Alignment:
Q  547 tatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    ||||||||||| ||  |||| |||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  2022735 tatcttgattgttgtaaagatgctgctgcacttgaaacctgaaaagtttaatggttatgcatgtaaaactcaaagcgcat 2022814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 35369341 - 35369221
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcata---ggattgcca 636  Q
    |||| ||||||||||||| |   ||||| ||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||   || ||||||    
T  35369341 tgttgtatatcttgattgtt---aagagactgctgcacttgaaacctgaaaagtttaatggttatgcatgtaaaactcaaagcgcatatgggggttgcca 35369245  T
Q  637 cattaatatataggttcgagtcgc 660  Q
    || |||| | ||||||||| ||||    
T  35369244 cactaatctttaggttcgattcgc 35369221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 538 - 660
Target Start/End: Original strand, 39903608 - 39903730
Alignment:
Q  538 actgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccac 637  Q
    |||||||||||||||| ||| ||| ||||||||| || |||||||||| |||| |||||||  | ||||||||||| ||||||||| || || |||||||    
T  39903608 actgttatatatcttgtttgttggaaagaggctgctgcacttgaaacccgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccac 39903707  T
Q  638 attaatatataggttcgagtcgc 660  Q
    | |||  | ||||||||| ||||    
T  39903708 actaacctttaggttcgattcgc 39903730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 4446397 - 4446332
Alignment:
Q  136 attctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    ||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4446397 attcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 4446332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 638
Target Start/End: Complemental strand, 13556744 - 13556646
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||||||||||| ||| |||||||||| |  || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||    
T  13556744 tgttatatatcttgtttgttgggaagaggttactgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 13556646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 626
Target Start/End: Original strand, 25183859 - 25183945
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    |||||| ||| ||| ||| | ||||||||||  || |||||||||||||||  ||||||  ||||||||||||| || |||||||||    
T  25183859 tgttatttatattgtttgttcggaagaggcttctgcacttgaaacctgaaatctttaatgattatgcatgtaaaactgaaagcgcat 25183945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 22160471 - 22160524
Alignment:
Q  149 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 202  Q
    |||| |||||| |||||| ||||| |||| ||||| ||||||||||||||||||    
T  22160471 acactcctcctcaagctgaagcatacatgtcatatacaccaagcttgttacaaa 22160524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 33703039 - 33702918
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  33703039 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 33702940  T
Q  640 taatatataggttcgagtcgct 661  Q
    |||  | ||||||||| |||||    
T  33702939 taacctttaggttcgattcgct 33702918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 5458451 - 5458331
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  5458451 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 5458352  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  5458351 taacctttaggttcgattcgc 5458331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 5481927 - 5481807
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  5481927 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 5481828  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  5481827 taacctttaggttcgattcgc 5481807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 8458076 - 8458196
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  8458076 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 8458175  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  8458176 taacctttaggttcgattcgc 8458196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 8464515 - 8464635
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  8464515 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 8464614  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  8464615 taacctttaggttcgattcgc 8464635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 10591734 - 10591614
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  10591734 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 10591635  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  10591634 taacctttaggttcgattcgc 10591614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 31076841 - 31076721
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  31076841 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 31076742  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  31076741 taacctttaggttcgattcgc 31076721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 540 - 655
Target Start/End: Complemental strand, 1302684 - 1302569
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  1302684 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 1302585  T
Q  640 taatatataggttcga 655  Q
    |||  | |||||||||    
T  1302584 taacctttaggttcga 1302569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 4049572 - 4049692
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || |||||||||||||||  ||||||  | ||||||||||| ||||||||| || || ||||||||     
T  4049572 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatatttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 4049671  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  4049672 taacctttaggttcgattcgc 4049692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 4054706 - 4054826
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || |||||||||||| || |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  4054706 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctggaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 4054805  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  4054806 taacctttaggttcgattcgc 4054826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 6858494 - 6858374
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| |||||||||| || || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  6858494 tgttatatatcttgtttgttgggaagaggatgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 6858395  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  6858394 taacctttaggttcgattcgc 6858374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 10586621 - 10586501
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| ||  | ||||||||     
T  10586621 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgaggttgccacac 10586522  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  10586521 taacctttaggttcgattcgc 10586501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 10673377 - 10673257
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||| ||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  10673377 tgttatatattttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 10673278  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  10673277 taacctttaggttcgattcgc 10673257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 10678492 - 10678372
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||| ||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  10678492 tgttatatattttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 10678393  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  10678392 taacctttaggttcgattcgc 10678372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 31081946 - 31081826
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||| ||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  31081946 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctaaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 31081847  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  31081846 taacctttaggttcgattcgc 31081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 626
Target Start/End: Original strand, 29827193 - 29827279
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    |||| ||||||||||||| ||| ||||  ||| || |||| |||||||||||||||||| |||||||||||||| ||||||||||||    
T  29827193 tgttgtatatcttgattgttggaaagatactgctgcacttaaaacctgaaaagtttaatggttatgcatgtaaaactcaaagcgcat 29827279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 543 - 660
Target Start/End: Original strand, 33703068 - 33703185
Alignment:
Q  543 tatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaa 642  Q
    ||||||||||| ||| ||| ||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || |||||||| |||    
T  33703068 tatatatcttgtttgttggaaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacactaa 33703167  T
Q  643 tatataggttcgagtcgc 660  Q
      | ||||||||| ||||    
T  33703168 cctttaggttcgattcgc 33703185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 6853391 - 6853271
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    ||||||||| || | ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  6853391 tgttatataactagtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 6853292  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  6853291 taacctttaggttcgattcgc 6853271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 550 - 638
Target Start/End: Original strand, 20890836 - 20890924
Alignment:
Q  550 cttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||||| ||||||||| ||| || |||| ||| || ||||||||||| |||||||||||||| ||||||||| || || ||||||||    
T  20890836 cttgattgttgggaagagactgctgcactttaaatctaaaaagtttaatggttatgcatgtaaaactcaaagcgtatggggttgccaca 20890924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 16372 - 16492
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  16372 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 16471  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  16472 taacctttaggttcgattcgc 16492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 632
Target Start/End: Original strand, 16277 - 16369
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggatt 632  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || |||||    
T  16277 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgggatt 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 26982315 - 26982195
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  26982315 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 26982216  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  26982215 taacctttaggttcgattcgc 26982195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 638
Target Start/End: Complemental strand, 18609064 - 18608969
Alignment:
Q  543 tatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||| |||||||| |||||||| |||| || |||||||||||||||||||| || |||||||||||||| |||||||| ||| || ||||||||    
T  18609064 tatataacttgattgttgggaagatgctgctgcacttgaaacctgaaaagtttgatggttatgcatgtaaaactcaaagcacatggggttgccaca 18608969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 8472686 - 8472618
Alignment:
Q  133 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8472686 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 8472618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 34107994 - 34108114
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | |||||||||||  |||||||| || || ||||||||     
T  34107994 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaaatcaaagcgtatggggttgccacac 34108093  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  34108094 taacctttaggttcgattcgc 34108114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 14315350 - 14315230
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||| ||| ||| |||||||| |||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  14315350 tgttatatattttgtttgttgggaagaagctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 14315251  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  14315250 taacctttaggttcgattcgc 14315230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 14319054 - 14318934
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||| ||  ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  14319054 tgttatatattttatttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 14318955  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  14318954 taacctttaggttcgattcgc 14318934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 636
Target Start/End: Complemental strand, 10341389 - 10341299
Alignment:
Q  546 atatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgcca 636  Q
    |||||||||||| |||||||| |||  || | ||||||| ||||||||| |||  ||||||||||||| |||||||||||| |||||||||    
T  10341389 atatcttgattgttgggaagatgctactgcatttgaaacttgaaaagttcaatgattatgcatgtaaaactcaaagcgcatgggattgcca 10341299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 638
Target Start/End: Complemental strand, 25953598 - 25953500
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||| |||||||| |||| ||||||||| ||  || |||||||||||||||||||| || |||| ||||||||| ||||||| |||| || ||||||||    
T  25953598 tgttgtatatcttaattgttgggaagagactactgcacttgaaacctgaaaagtttgatggttaagcatgtaaaactcaaagtgcatggggttgccaca 25953500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 26987428 - 26987308
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| |||  |||||||||||| || ||||||||||||||| |||||||  | ||||||||||| || |||||| ||  | ||||||||     
T  26987428 tgttatatatcttgtttgtagggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaacttaaagcgtatgtggttgccacac 26987329  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  26987328 taacctttaggttcgattcgc 26987308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 32593531 - 32593464
Alignment:
Q  134 agattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    ||||||| |||||| ||||| ||||| |||||||| ||| |||||||| |||||||||||||||||||    
T  32593531 agattcttaattttaacacctctcctcaagctggaacatgcatgacatgtgcaccaagcttgttacaa 32593464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 18884828 - 18884949
Alignment:
Q  539 ctgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    ||||||||||||||||||| | | || ||| ||||| ||||| || |||||||||||||  ||||||||  |||| |||||| || || || ||||||||    
T  18884828 ctgttatatatcttgattgtttgaaaaaggatgttgcacttggaatctgaaaagtttaacggttatgcacataaaactcaaaacgtatggggttgccaca 18884927  T
Q  639 ttaatatataggttcgagtcgc 660  Q
     ||| || ||||||||| ||||    
T  18884928 ctaacatttaggttcgattcgc 18884949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 541761 - 541825
Alignment:
Q  137 ttctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    |||| |||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  541761 ttcttaattttaacacccctcctcaagctggagcatatctgacataagcaccaagcttgttacaa 541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 660
Target Start/End: Complemental strand, 43957280 - 43957168
Alignment:
Q  548 atcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacattaatatat 647  Q
    |||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | |||||||||||  |||||||| || || ||| |||| |||  | |    
T  43957280 atcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaattcaaagcgtatggggttgtcacactaaccttt 43957181  T
Q  648 aggttcgagtcgc 660  Q
    |||||||| ||||    
T  43957180 aggttcgattcgc 43957168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 20075626 - 20075586
Alignment:
Q  161 aagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  20075626 aagctggagcatacatgacatatgcacacagcttgttacaa 20075586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 12856554 - 12856674
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  12856554 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 12856653  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  12856654 taacctttaggttcgattcgc 12856674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 14610129 - 14610249
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  14610129 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 14610228  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  14610229 taacctttaggttcgattcgc 14610249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 26050786 - 26050906
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  26050786 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 26050885  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  26050886 taacctttaggttcgattcgc 26050906  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 26060145 - 26060265
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  26060145 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 26060244  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  26060245 taacctttaggttcgattcgc 26060265  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 540 - 638
Target Start/End: Original strand, 11056390 - 11056488
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||||||||||| ||| |||||||||| || || ||||||||| ||||| |||||||  ||||||||||||| |||||||||||| || ||||||||    
T  11056390 tgttatatatcttgtttgttgggaagaggttgctgcacttgaaacatgaaatgtttaatgattatgcatgtaaaactcaaagcgcatggggttgccaca 11056488  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 1012308 - 1012240
Alignment:
Q  133 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1012308 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 1012240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 14615195 - 14615315
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || || |||||     
T  14615195 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggtttccacac 14615294  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  14615295 taacctttaggttcgattcgc 14615315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 26055899 - 26056019
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| ||  | ||||||||     
T  26055899 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgaggttgccacac 26055998  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  26055999 taacctttaggttcgattcgc 26056019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 26065258 - 26065378
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| ||  | ||||||||     
T  26065258 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatgaggttgccacac 26065357  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  26065358 taacctttaggttcgattcgc 26065378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 655
Target Start/End: Original strand, 12851439 - 12851554
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || |||||||| |||||| |||||||  | ||||||||||| ||||||||| || || ||||||||     
T  12851439 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaaactgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 12851538  T
Q  640 taatatataggttcga 655  Q
    |||  | |||||||||    
T  12851539 taacctttaggttcga 12851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 540 - 625
Target Start/End: Complemental strand, 37460279 - 37460194
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgca 625  Q
    ||||||||| |||||||||||| ||||| |||||| |||||||||||||||  ||||||  ||||||||||||| || ||||||||    
T  37460279 tgttatataacttgattgctggaaagagactgttggacttgaaacctgaaatttttaatgattatgcatgtaaaacttaaagcgca 37460194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 626
Target Start/End: Complemental strand, 35352730 - 35352644
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcat 626  Q
    ||||||||| |||||||| |||||||||| |  || ||||||||| || |||||||||| |||| ||||||||| ||||||||||||    
T  35352730 tgttatataacttgattgatgggaagaggttcctgcacttgaaacatggaaagtttaatggttaagcatgtaaaactcaaagcgcat 35352644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 540 - 636
Target Start/End: Complemental strand, 5436969 - 5436874
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgcca 636  Q
    |||| ||||||||||| | |||||||| |||| || ||||||||| |||||| | |||| |||||||||||||| |||||||||||| || ||||||    
T  5436969 tgttgtatatcttgatcgttgggaagatgctgctgcacttgaaacttgaaaaatctaatggttatgcatgtaaa-ctcaaagcgcatggggttgcca 5436874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 623
Target Start/End: Complemental strand, 4181820 - 4181737
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcg 623  Q
    ||||||||| |||||||| | | |||||| || || ||||||||| ||||||||||||| |||||| |||||||  ||||||||    
T  4181820 tgttatataacttgattgttagaaagaggttgctgcacttgaaacttgaaaagtttaatggttatgtatgtaaaattcaaagcg 4181737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 321954 - 321888
Alignment:
Q  133 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 201  Q
    |||||||| |||||| ||| ||||||| |||||| ||||| ||||||||  ||||||||||||||||||    
T  321954 aagattcttaattttaacatccctcctcaagctgaagcatacatgacat--gcaccaagcttgttacaa 321888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 143861 - 143981
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    ||||| |||||||| ||| ||||||||||||| || ||||||||||||||| |||||||  ||| |||||||||  ||||||||||| || ||||||||     
T  143861 tgttagatatcttgtttgttgggaagaggctgctgcacttgaaacctgaaatgtttaatgcttacgcatgtaaaattcaaagcgcatggggttgccacac 143960  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  143961 taacctttaggttcgattcgc 143981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 638
Target Start/End: Original strand, 3910 - 4008
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccaca 638  Q
    |||||||||||||| ||| || |||||||||| || ||||||||||||||| |||||||  | ||||||||||| ||||||||| || || ||||||||    
T  3910 tgttatatatcttgtttgttgagaagaggctgctgcacttgaaacctgaaatgtttaatgatcatgcatgtaaaactcaaagcgtatggggttgccaca 4008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 622
Target Start/End: Original strand, 170583 - 170665
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagc 622  Q
    |||||||||||||||||| | ||| || |||| || |||||||| |||||||||||||| |||||||||||||| || |||||    
T  170583 tgttatatatcttgattgttaggatgaagctgctgcacttgaaatctgaaaagtttaatggttatgcatgtaaaacttaaagc 170665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 7416 - 7296
Alignment:
Q  540 tgttatatatcttgattgctgggaagaggctgttgaacttgaaacctgaaaagtttaattgttatgcatgtaaatctcaaagcgcataggattgccacat 639  Q
    |||||||||||||| ||| ||||||||||||| || |||||||| ||  ||  ||||||  | ||||||||||| ||||||||| || || ||||||||     
T  7416 tgttatatatcttgtttgttgggaagaggctgctgcacttgaaatctttaatttttaatgatcatgcatgtaaaactcaaagcgtatggggttgccacac 7317  T
Q  640 taatatataggttcgagtcgc 660  Q
    |||  | ||||||||| ||||    
T  7316 taacctttaggttcgattcgc 7296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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