View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_10 (Length: 466)
Name: NF20016_low_10
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 118 - 452
Target Start/End: Complemental strand, 44154151 - 44153817
Alignment:
| Q |
118 |
atcctaaatattaaggcattaggaatgtgttatttatctaatatattcagctttcttagtcgatgggacactaaccactcgtgttttagctcatcatcaa |
217 |
Q |
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| T |
44154151 |
atcctaaatattaaggcattaggaatgtgttatttatctaatatatttagctttcttagtcgatgggatactaaccactcgtgttttagctcatcatcaa |
44154052 |
T |
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| Q |
218 |
ggatggttttacatttgttccacttcgaagaagattgagaaagaaagtattcttttgctcaaatttaagtttaacttgagaagatcgactactaataaat |
317 |
Q |
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| T |
44154051 |
ggatggttttacagttgttccacttcgaagaagattgagaaagaaagtattcttttgctcaaatttgagtttaacttgagaagatcgactactaataaat |
44153952 |
T |
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| Q |
318 |
tatgtttttgtcttctaatgtcataataatttaaacaacagaatattgaggaggccataggatgctcctagtttttgtcattgctctcatagtgagctta |
417 |
Q |
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| T |
44153951 |
tatgtttttgtcttctaatgtcataataatttaaacaacagaatattgaggaggccataggatgctcctagtttttgtcattgctctcatagtgagctta |
44153852 |
T |
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| Q |
418 |
aatcttggttaactcggcagcaacactcttttatg |
452 |
Q |
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| T |
44153851 |
aatcttggttaactcggcagcaacactcttttatg |
44153817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 44154286 - 44154182
Alignment:
| Q |
5 |
gtggaatatgacttgaaagacctttacacacttttatattctattgaattgcacatagtagatgttggtgagtcctggatgcatggcaacaatgagccca |
104 |
Q |
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| T |
44154286 |
gtggaatatgacttgaaagacctttacacacttttatattctattgaattgcacatagtagatgttggtgagtcctggatgcatggcaacaatgagccca |
44154187 |
T |
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| Q |
105 |
ataat |
109 |
Q |
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| T |
44154186 |
ataat |
44154182 |
T |
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