View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_11 (Length: 452)
Name: NF20016_low_11
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 68 - 445
Target Start/End: Original strand, 18611361 - 18611738
Alignment:
| Q |
68 |
attatttcaacagatcatatgctgaatgagacttataaacaagaattcagtgattgggatcatgcaatacttgcaattggaacgcttgggaataacaatt |
167 |
Q |
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| T |
18611361 |
attatttcaacagatcatatgctgaatgagacttataaacaagaattcagtgattgggatcatgcaatacttgcaattggaacacttgggaataacaatt |
18611460 |
T |
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| Q |
168 |
tgaatgaaaattcaaataaaagtattgatgaagaggattcatactcctttcaagatttcacacatgagttctcttttgaagaagttggaaattttcagaa |
267 |
Q |
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| T |
18611461 |
tgaatgaaaattcaaataaaagtattgatgaagaggattcacactcctttcaagatttcacacatgagttctcttttgaagaagttgggaattttcagaa |
18611560 |
T |
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| Q |
268 |
tgaattgaaaatgaatttggaagagagtggtaatttctatccaagcaacaatttaatatgcaataggggaagaaagagtttggataaaagtaataagaat |
367 |
Q |
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| T |
18611561 |
tgaattgaaaatgaatttggaagagagtggtaatttctatccaagcaacaatttaatatgcaataggggaagaaagagtttggataaaagtaataagaat |
18611660 |
T |
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| Q |
368 |
gaagtttctaatcaatcactttctttccttcttaagaagatttttgtgtgtggaggtgaattgccccctacttctgtg |
445 |
Q |
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| T |
18611661 |
gaagtttctaatcaatcactttctttccttcttaagaagatttttgtgtgtggaggtgaattgccacctacatctgtg |
18611738 |
T |
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