View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_12 (Length: 446)
Name: NF20016_low_12
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 11119809 - 11119376
Alignment:
| Q |
1 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaactaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |
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| T |
11119809 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacctcaagccattcagtaatgatactgatgcaactgca |
11119710 |
T |
|
| Q |
101 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcgggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
11119709 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcgggg |
11119610 |
T |
|
| Q |
201 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11119609 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaat |
11119510 |
T |
|
| Q |
301 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatggatttaataatgtcatttcagaaccccaactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119509 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatggatttaataatgtcatttcagaaccccaactt |
11119410 |
T |
|
| Q |
401 |
gaccctaacaatgagaatgaatatgatgttgatg |
434 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
11119409 |
gaccctaacaatgagaatgaagatgatgttgatg |
11119376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 12206306 - 12205970
Alignment:
| Q |
1 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaactaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | |
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| T |
12206306 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacgtcaagccaatcaggaatgatactgatgcaacctta |
12206207 |
T |
|
| Q |
101 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcgggg |
200 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12206206 |
atgtctgattatgctcgtgataagaactgtgatgttgaa------------cctaaggtgaatttaggaaatgctataaatgttgctgatgttatcgggg |
12206119 |
T |
|
| Q |
201 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaat |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
12206118 |
aacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaat |
12206019 |
T |
|
| Q |
301 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggtt |
349 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
12206018 |
taaaggcgcacactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 32741513 - 32741098
Alignment:
| Q |
1 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaactaca |
100 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
32741513 |
tacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcattggatgaagacctcaagccattcaggaatgatactgatgcaactgca |
32741414 |
T |
|
| Q |
101 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcgggg |
200 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
32741413 |
atgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattgggg |
32741314 |
T |
|
| Q |
201 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaat |
300 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||| |
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| T |
32741313 |
aacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaat |
32741214 |
T |
|
| Q |
301 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatggatttaataatgtcatttcagaaccccaactt |
400 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
32741213 |
taaaggcacacgctttgatgatagtgaagaagagaagatggctgcggttgatgatgggtttg------------ataatgtcatttcagaaccccaactt |
32741126 |
T |
|
| Q |
401 |
gaccctaacaatgagaatgaatatgatg |
428 |
Q |
| |
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||||||||||||| |||||| |||||| |
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|
| T |
32741125 |
gaccctaacaatgctaatgaagatgatg |
32741098 |
T |
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