View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_14 (Length: 425)
Name: NF20016_low_14
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 216 - 410
Target Start/End: Complemental strand, 26016701 - 26016507
Alignment:
| Q |
216 |
gaaagaagacagggtttgacaattaaaacgttgtttaagtactttgaccgaatatttgtagggctgttatttgggataggttaagataaattagctacgt |
315 |
Q |
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| T |
26016701 |
gaaagaagacagggtttgacaattaaaacgttgtttaagtactttgaccgaatatttgtagggctgttatttgggataggttaagataaattagctacgt |
26016602 |
T |
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| Q |
316 |
acttacgttggttcacaatagtttggccggttttctagaattttggattggaattagcataaccccacaaccatgctggactcattctttgtttt |
410 |
Q |
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| T |
26016601 |
acttacgttggttcacaatagtttggccggttttctagaattttggattggaattagcataaccccacaatcatgctggactcattctttgtttt |
26016507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 219 - 395
Target Start/End: Original strand, 26019645 - 26019824
Alignment:
| Q |
219 |
agaagacagggtttgacaattaaaacgttgtttaagtactttgaccgaatatttgtagggctgttatttgggataggttaagataaattagctacgtact |
318 |
Q |
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| T |
26019645 |
agaagacagggtttgactattaaaacgttgtttaagtactttgaccgaatatttgtggggctgttatttcggatgggttaagataaattagctacgtcct |
26019744 |
T |
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| Q |
319 |
tac---gttggttcacaatagtttggccggttttctagaattttggattggaattagcataaccccacaaccatgctgga |
395 |
Q |
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| T |
26019745 |
tacgttgttggttcacaatggtttggccaggtttctagaattttcgattggaattagcacaacaccataaccatgctgga |
26019824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26016911 - 26016802
Alignment:
| Q |
1 |
ggttgggagagaatccgtggaagaagaaatgatatagcaatttttggtgaagtaatgggaagaggaaagagagaatataggagaatttggaattgcaacg |
100 |
Q |
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| T |
26016911 |
ggttgggagagaatccgtggaagaagaaatgatatagcaatttttggtgaagtaatgggaagaggaaagagagaatataggagaatttggaattgcaacg |
26016812 |
T |
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| Q |
101 |
gaacaagaca |
110 |
Q |
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| T |
26016811 |
gaacaagaca |
26016802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 26016757 - 26016718
Alignment:
| Q |
155 |
atttagtataagtagtgttatagagaagacaaggtttgac |
194 |
Q |
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| T |
26016757 |
atttagtataagtagtgttatagagaagacaaggtttgac |
26016718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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