View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_low_2 (Length: 662)

Name: NF20016_low_2
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_low_2
NF20016_low_2
[»] chr7 (1 HSPs)
chr7 (18-648)||(32712517-32713146)


Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Original strand, 32712517 - 32713146
Alignment:
Q  18 atatgataatggacccaaattcagagttatcatcaagaatggtacgtatatacatcgactatactactttaacatcaagctcaaaactaacatctagggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32712517 atatgataatggacccaaattcagagttatcatcaagaatggtacgtatatacatcgactatactacttaaacatcaagctcaaaactaacatctagggg 32712616  T
Q  118 acccaattcagctgtccatttgttagagtaccaaataattaaagccttgctctattttcatatgatttctatttcttttcataaggtatttctataatat 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32712617 acccaattcagctgtacatttgttagagtaccaaataattaaagccttgctctattttcatatgatttctatttcttttcataaggtatttctata-tat 32712715  T
Q  218 atttctctctaaattggttatgtacagaggctatatggttaggttaggtcattgtggatcatgtagggaatccttcttaatatcttcatccactacacct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32712716 atttctctctaaattggttatgtacagaggctatatggttagggtaggtcattgtggatcatgtagggaatccttcttaatatcttcatccactacaact 32712815  T
Q  318 gccattttcttagccaaagccaaagtcatctagcttagtaacccacatgtacaagcttagcatcatctttataacataacacatgagaagatccttttga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32712816 gccattttcttagccaaagccaaagtcatctagcttagtaacccacatgtacaagcttagcatcatctttataacataacacatgagaagatccttttga 32712915  T
Q  418 tgggaagactcaaattgacactaggggacttgagagtgtattcattggatttgtaaattgtgtacataattaagttaatcatcatttatgagatcccatc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32712916 tgggaagactcaaattgacactaggggacttgagagtgtattcattggatttgtaaattgtgtacatcattaagttaatcatcatttatgagatcccatc 32713015  T
Q  518 atttacatatgcatgttagttgtagttgaaattaataatttgcgatttattatatttctttttgcaggttttatccttatcaaagaggatagttccatct 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32713016 atttacatatgcatgttagttgtagttgaaattaataatttgcgatttattatatttctttttgcaggttttatccttatcaaagaggatggttccatct 32713115  T
Q  618 attacgcaactactcgaaagcaagtttgatg 648  Q
    |||||||||||||||||||||||||||||||    
T  32713116 attacgcaactactcgaaagcaagtttgatg 32713146  T

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