View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_low_24 (Length: 378)
Name: NF20016_low_24
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 36842085 - 36842429
Alignment:
| Q |
15 |
aatatatatcatatgatgagcttccaaaattgcatgacaaatatcctcccaacatttactatgttgaaacatttttccaccttcgagttcgatctcaggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36842085 |
aatatatatcatatgatgagcttccaaaattgcatgacaaatatcctcccaacatttactatgttgaaacatttttccaccttcgagttcgatctcaggt |
36842184 |
T |
|
| Q |
115 |
agcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgccataattaacacttccat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36842185 |
agcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgccataattaacacttccat |
36842284 |
T |
|
| Q |
215 |
tatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaataattggaaaccaatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36842285 |
tatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaataattggaaaccaatc |
36842384 |
T |
|
| Q |
315 |
attaagaatgtttccagagagtatcttttgaacaggtatttccac |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36842385 |
attaagaatgtttccagagagtatcttttgaacaggtatttccac |
36842429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 3120864 - 3120931
Alignment:
| Q |
130 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
197 |
Q |
| |
|
||||| |||||||||||||| || || || || ||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
3120864 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
3120931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University